DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH7803) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = -2
Query:  179 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVL----PDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 589
            IG+G+V  +G D+ ++ YGAM    L    LL+  G+  TV +ARF +PLD +L+  L +    ++T+EEG+L GGFGS ++     + LLD+ +K  P +L    PD  ++HA+P Q     GLT   +A +    L R++
Sbjct:  495 IGRGEVLRDGDDLLIVAYGAMNSKALATADLLASCGVQSTVVNARFLRPLDDELLHPLARRIGKVVTIEEGTLAGGFGSALT-----ESLLDADIK--PSILRLGIPDVLVDHATPQQSFEKLGLTPAQMAESIQGFLQRSK 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEMY (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  230 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 592
            EIGK  V  +GK  ALL +G  +     A AL     ++ TV D RF KPLD  L+REL  +H  L+T+EE + +GG GS VS F+A   ++      +P++   LPD Y+EHA P Q LA  GL
Sbjct:  500 EIGKAIVRRQGKGAALLVFGVQL-----AEALQVGEALNATVVDMRFVKPLDEALLRELAGSHELLVTIEENAVMGGAGSAVSEFLAAQNII------KPLLHLGLPDYYVEHAKPAQMLAECGL 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 52/145 (35.86%), Postives = 82/145 (56.55%), Query Frame = -2
Query:  164 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG-RTREALLL 592
            +IG+G++  +G D+ +L YG+MV   ++   LL + GI  TV +ARF +PLD  L+  L +    ++T+EEG+L GGFGS V    +   LL   V    + +PD  ++HASP Q     GLT   ++ + +   G  T ++L L
Sbjct:  494 KIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFGSAVVESFSDQDLL---VPTFRLGIPDKLVDHASPQQSKESLGLTPSQMSKSIMKRYGWDTSDSLFL 635          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_THEEB (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxs PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = -2
Query:  164 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLL 592
            EIGKG++   G+D+ L+ YG+MV   ++   +L + G+   V +ARF KPLD +L+  L +    ++T+EEG L GGFGS V   +    +L   V    + +PD  +EHASP +  A  GLT   +A T +   G  + A ++
Sbjct:  495 EIGKGELLRSGEDLLLVAYGSMVYPAMQVAEILKEHGMSAAVINARFAKPLDTELILPLAKQIGRVVTLEEGCLMGGFGSAVLEALQEADIL---VPVLRLGVPDILVEHASPDESKADLGLTPPQMAETIMQKFGVPQRATVV 635          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 53/135 (39.26%), Postives = 82/135 (60.74%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       +GK +A+L +G MV     A +L +   +D TVA+ RF KP+D +LV+ L + H +L+TVEEG  +GG GS       ++ +++SGV  RP++   LPD +++H  P + L+L GL G  IA
Sbjct:  489 LGKGEVRRRTSQPDGKRIAILAFGTMV-----APSLAAADALDATVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGS-----ACVEAMMESGVV-RPVLQLGLPDRFVDHGDPAKLLSLCGLDGDGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +++TVEEG  +GG GS       ++ L++SGV  RP++   LPD +I+H  P + L+  GL G  IA
Sbjct:  489 LGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAAEELDATVANMRFVKPVDAALVRELAETHDYVVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVLQLGLPDLFIDHGDPAKLLSQCGLDGAGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            IGKG     G+ +A+L +G +V       AL     +D+TVAD RF +PLD  L+REL   H  L+TVEE ++ GG GS VS ++A  GL    V  R + LPD +++H +P + LA  GL
Sbjct:  495 IGKGVCRRRGRRIAVLAFGTLV-----VPALAVAEALDLTVADMRFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAGL---DVPVRHLGLPDRFVDHGTPAELLAEVGL 607          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain GB-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V  +G+ +ALL +G  +     A A+     I+ TV D RF KPLD  LV EL  +H  L+T+EE + +GG G+ V  F+A   +L      +P++   LPD Y+EHA P Q LA  GL    I A+  + + +
Sbjct:  500 EIGKGVVRRQGEKIALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVL------KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = -2
Query:  206 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAAT 592
            EIGKG V  +G+ VALL +G  +     A A+     I+ TV D RF KPLD  LV EL  +H  L+T+EE + +GG G+ V  F+A   +L      +P++   LPD Y+EHA P Q LA  GL    I A+
Sbjct:  500 EIGKGVVRRQGEKVALLVFGVQL-----AEAMQVAEQINATVVDMRFVKPLDEALVLELAGSHELLVTIEENAIMGGAGAAVGEFLASQAVL------KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEAS 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +L+TVEEG  +GG GS       ++ L++SGV  RP++   LPD +++H    + LA  GL G  IA
Sbjct:  501 LGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAAEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVLQLGLPDQFVDHGDHAKLLAQCGLDGAGIA 624          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_SYNPW3.134e-1636.621-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PSEMY3.134e-1643.201-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PROM44.093e-1635.861-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_THEEB5.346e-1636.111-deoxy-D-xylulose-5-phosphate synthase OS=Thermos... [more]
DXS_BURP65.346e-1639.261-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCJ5.346e-1642.221-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_ALHEH5.346e-1642.151-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_PSEPG6.981e-1639.291-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEP16.981e-1642.111-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BURCH6.981e-1642.221-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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