DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +L+TVEEG  +GG GS       ++ L++SGV  RP++   LPD +++H    + LA  GL G  IA
Sbjct:  489 LGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAAEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVLQLGLPDQFVDHGDHAKLLAQCGLDGAGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +L+TVEEG  +GG GS       ++ L++SGV  RP++   LPD +++H    + LA  GL G  IA
Sbjct:  489 LGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAAEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVLQLGLPDQFVDHGDHAKLLAQCGLDGAGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = -2
Query:  182 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDS--GVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 589
            IG+G++  EG D+ ++ YG+MV   L    LL + G+  TV +ARF +PLD  L+  L +    ++T+EEG+L GGFG+ V     L+ L D    V    I +PD  ++HA+P Q     GLT   +A   L     T
Sbjct:  495 IGRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAV-----LESLTDQDINVSMLRIGIPDKLVDHATPQQSKEALGLTPAQMAERILERFSNT 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain W619) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG +  +G+ VALL +G  +     A AL     I+ TV D RF KPLD  LV EL  +H  L+T+EE + +GG G+ V  F+A   ++      +P++   LPD Y+EHA P Q LA  GL    I A+  + + +
Sbjct:  500 EIGKGVIRRQGEKVALLVFGVQL-----AEALQVAEQINATVVDMRFVKPLDEALVLELAGSHALLVTLEENAIMGGAGAAVGEFLASQAVI------KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEASVKARMAK 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 589
            IG G+V  EG DV ++ YGAMV   +     L+ +G++V V +AR+ +PLD  L+  + +    ++T+EEG+L GGFGS V   +   GL    +    I +PD  ++HA+P Q     GLT   +A
Sbjct:  495 IGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIHPMAKQIGKIVTMEEGALAGGFGSAVLESLQEKGL---AIPMLRIGIPDRLVDHATPQQSFEALGLTPDQMA 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxs PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  188 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 589
            IGK +   +G D+ +L YG+MV   L+   LL++ GI  TV +ARF KPLD +L+  L +    ++T EEG L GGFGS +   +      D  V   PI +PD  +EHASP +     GLT   +A   L   G
Sbjct:  495 IGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAH---DLQVPVLPIGVPDLLVEHASPDESKQELGLTPRQMADRILEKFG 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 589
            IGKG++   G D+ L+GYGAMV + L+   +LS+ GI  TV +ARF KPLD +L+  L +    + T EEG L GGFGS V   +    +L   V  +   + D  ++HA+P +  A  GLT   +A
Sbjct:  496 IGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHDVL---VPVKRFGIGDVLVDHATPAESKAAHGLTPAQMA 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNE7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  188 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 589
            IGK +   +G D+ +L YG+MV   L+   LL++ GI  TV +ARF KPLD +L+  L +    ++T EEG L GGFGS +   +      D  V   PI +PD  +EHASP +     GLT   +A   L   G
Sbjct:  495 IGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAH---DLQVPVLPIGVPDLLVEHASPDESKQELGLTPRQMADRILEKFG 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       +GK +A+L +G MV     A +L +   +D TVA+ RF KP+D +LV+ L + H +L+TVEEG  +GG GS       ++ +++SG   RP++   LPD +++H  P + L+L GL G  IA
Sbjct:  489 LGKGEVRRRTSQPDGKRIAILAFGTMV-----APSLAAADALDATVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGS-----ACVEAMMESGAV-RPVLQLGLPDRFVDHGDPAKLLSLCGLDGDGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       +GK +A+L +G MV     A +L +   +D TVA+ RF KP+D +LV+ L + H +L+TVEEG  +GG GS       ++ +++SG   RP++   LPD +++H  P + L+L GL G  IA
Sbjct:  489 LGKGEVRRRTSQPDGKRIAILAFGTMV-----APSLAAADALDATVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGS-----ACVEAMMESGAV-RPVLQLGLPDRFVDHGDPAKLLSLCGLDGDGIA 612          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_BURCC6.981e-1642.221-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCA6.981e-1642.221-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_SYNSC9.118e-1636.691-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PSEPW9.118e-1639.291-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_SYNS31.191e-1537.011-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNP61.191e-1539.261-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNP21.191e-1540.161-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNE71.191e-1539.261-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_BURPS1.555e-1538.521-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP11.555e-1538.521-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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