DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       +GK +A+L +G MV     A +L +   +D TVA+ RF KP+D +LV+ L + H +L+TVEEG  +GG GS       ++ +++SG   RP++   LPD +++H  P + L+L GL G  IA
Sbjct:  489 LGKGEVRRRTSQPDGKRIAILAFGTMV-----APSLAAADALDATVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGS-----ACVEAMMESGAV-RPVLQLGLPDRFVDHGDPAKLLSLCGLDGDGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       +GK +A+L +G MV     A +L +   +D TVA+ RF KP+D +LV+ L + H +L+TVEEG  +GG GS       ++ +++SG   RP++   LPD +++H  P + L+L GL G  IA
Sbjct:  489 LGKGEVRRRTSQPDGKRIAILAFGTMV-----APSLAAADALDATVANMRFVKPIDAELVQALARTHDYLVTVEEGCVMGGAGS-----ACVEAMMESGAV-RPVLQLGLPDRFVDHGDPAKLLSLCGLDGDGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IGK  V  EG D A+L +G M+    KA A L + G ++ + +A   KPLD KL+  L +    L+T+EE  L GGFGS V  F    G+    V+ + + +PD ++EH S ++     GLT   IA T +S+L + R+
Sbjct:  491 IGKWNVLQEGTDAAILTFGTMIPVAEKALAQLKQAGYNIRLINANSVKPLDEKLLEALAEEELPLLTIEESVLQGGFGSAVLEFYNEKGM---HVELKRMGIPDYFVEHGSVSELYQEVGLTPERIADTLISMLPQKRK 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CHLTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlorobium tepidum GN=dxs PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  200 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATAL 589
            +G+G++  +GK VALLG G M    L+  ALL   G+D  V D RF KPLD +++       T ++T+EE S +GGFGS+V +++        G+K     LPD ++ H S  +     GL    ++   L
Sbjct:  501 VGRGRILRDGKSVALLGIGTMSNRALETAALLEAAGLDPLVCDMRFLKPLDTEIIDMAASRCTHIVTIEENSIIGGFGSNVVNYL---HHAHPGIKCISFGLPDAFVTHGSMDELYREVGLDAESLSGKIL 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ANADE (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = -2
Query:  188 EIGKGKVF--VEGK-DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++   V GK DV ++  G  ++  L A   L+  G+ VTV D RF KPLD  L+         ++TVEEG L GGFG+         GLL++G+  R + +PD +I HA   +Q A  G+    IAA   +L+G
Sbjct:  490 EIGKGRLVRNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAVTVVDPRFVKPLDEALICAEAARAKRVVTVEEGCLAGGFGTACLEAFERHGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDAEAIAAACRALVG 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = -2
Query:  230 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV--LPDNYIEHASPTQQLALAGL 562
            G+ VA LG+G+MV   L A   L     D +VAD RF KPLD++LV+ L + H +L+TVEEGS +GG GS V     L+ L ++G+    +V  LPD +I+H  P   L+  GL
Sbjct:  508 GQRVAFLGFGSMVHPALGAAQAL-----DASVADMRFVKPLDVELVKRLAEEHNYLVTVEEGSVMGGAGSAV-----LEALAEAGIDIPVLVLGLPDRFIDHGDPALLLSQCGL 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_GEOKA (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus GN=dxs PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IG  +V  +G D A+L +G  +   LKA   L+K GI V V +ARF KP+D+ ++ EL ++   ++TVEE  L GGFGS V  F    G    G     + +PD +IEH S ++ L   GLT  HI     +++ R ++
Sbjct:  490 IGTWEVLRDGCDAAILTFGTTISMALKAADELAKDGISVKVVNARFLKPMDVAMLHELLESRLPILTVEEAVLQGGFGSAVLEFAHDHGY--HGAVIERMGIPDRFIEHGSVSELLNEIGLTSTHIIDRIKTMVPRKQK 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain NATL1A) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = -2
Query:  212 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 592
            EIGK +   EG+++ ++GYG+MV   +K  A+L + G++ TV +ARF +PLD   + E  +    ++T+EEG+ LGGFGS V      +   D  V    I +PD  ++HA+P Q     GLT   +A
Sbjct:  494 EIGKAETIEEGENLLIIGYGSMVFPAIKTAAILKEFGVNCTVINARFIRPLDEDTIHEAAKRIGKVVTMEEGTLLGGFGSAVVESFNDN---DIFVPTLRIGIPDKLVDHATPQQSKESLGLTPEMMA 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_LYSSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IG  +V  EGKD ++L +G  +   ++A  +L++ GID+ V +ARF KP+D  ++  +  NH  ++T+EE  L GGFGS V  F    G L++ V    + +PD YIEH +  Q L    +T     A    LL + ++
Sbjct:  492 IGSWEVLREGKDASILTFGTTIPMAMQAADMLAQQGIDIEVVNARFIKPMDKDMLHRILSNHKPILTIEEAVLKGGFGSGVLEFAHDHGYLNAIVD--RMGIPDQYIEHGNVDQLLEEIHMTAEDAVARMQVLLQQKQQ 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG+G+V  EG D+ ++ YG MV   +    LL + GI  TV +ARF +PLD  L+  L +    ++T+EEG+L GGFG+ V   ++   +L   V    I +PD  ++HASP Q     GLT
Sbjct:  495 IGRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGIKATVINARFLRPLDQALIHPLARRIGSVVTMEEGALAGGFGAAVVESLSDQDVL---VPTFRIGIPDQLVDHASPQQSREALGLT 613          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_BURP01.555e-1538.521-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURMA1.555e-1538.521-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BACSK1.555e-1537.411-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_CHLTE2.031e-1535.111-deoxy-D-xylulose-5-phosphate synthase OS=Chlorob... [more]
DXS_ANADE2.031e-1538.851-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_RALEJ2.653e-1543.861-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_GEOKA2.653e-1537.411-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_PROM13.465e-1537.501-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_LYSSC3.465e-1535.251-deoxy-D-xylulose-5-phosphate synthase OS=Lysinib... [more]
DXS_PROMM4.525e-1539.341-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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