DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus GN=dxs PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = -2
Query:  227 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 592
            +IG+G++  EG D+ ++ YG+MV    K    L + GI  TV +ARF +PLD  L+  L +    ++T+EEG+ LGGFGS +    A     D  V    I +PD  + HASP Q     GLT
Sbjct:  494 KIGRGEILSEGSDLLIIAYGSMVAPAQKTALCLKESGISATVINARFLRPLDQGLIHPLARRIGKVVTMEEGTLLGGFGSAIVESFADQ---DIAVSTYRIGIPDKLVHHASPQQSKEELGLT 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS1_GEOSL (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter sulfurreducens GN=dxs1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IG G++  EG DVA++  G  V   L+A   L++ GI  TV +ARF KPLD +++ +  +    +IT EE +L GGFGS V   +A +G+  +GV+ + + +PD ++E     Q  A  G+    IAA   + L
Sbjct:  492 IGTGEILAEGDDVAIIAIGITVLPALEAARTLAEKGIRATVINARFVKPLDREMILQAARRTGCIITAEENALQGGFGSAVLELLADEGM--TGVRVKRLGIPDRFVEQGPQPQLRADLGIDAAGIAAATEAFL 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  212 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 592
            +IG+G++  EG DV ++ YG+MVQ+  +   LL   GI   + +ARF +PLD  L+  L +    ++T+EEG+L GGFGS +   +  +   D  +    I +PD  ++HASP Q     GLT   +A
Sbjct:  494 KIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDN---DINIPVLRIGIPDVLVDHASPDQSKEKLGLTPDQMA 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURXL (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = -2
Query:  230 IGKGKVFVE-----GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 589
            +GKG++  E     GK +A+L +G MV   L A   L     D TVA+ RF KPLD  LVR+L + H  ++TVEEG  +GG GS       ++ LL SGV  RP++   LPD +I+H  P + LA  GL
Sbjct:  489 LGKGEIRRETSQPAGKRIAILAFGTMVAPSLAAAEQL-----DATVANMRFVKPLDADLVRQLAETHDAIVTVEEGCVMGGAGS-----ACVEALLASGVT-RPVLQLGLPDRFIDHGDPAKLLAACGL 606          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ANASK (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain K) GN=dxs PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = -2
Query:  188 EIGKGKVF--VEGK-DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIGKG++   V GK DV ++  G  ++  L A   L+  G+  TV D RF KPLD +L+         ++TVEEG L GGFG+         GLL++G+  R + +PD +I HA   +Q A  G+    IAA   +L+G
Sbjct:  490 EIGKGRLVRNVPGKPDVCVVAAGTTLKAALAAAEALAAEGVAATVVDPRFVKPLDEELICAEAARAKRVVTVEEGCLAGGFGTACLEAFERRGLLEAGLGVRRLGIPDEFITHAEQAKQRAWVGIDADAIAAACRALVG 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  158 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALLLMC 592
            E+GKG+V  EG  +A+L  G  V   L A   L + GI  TV +ARF KPLD +L+  + ++   ++TVEE  L GGFGS +  F+  + +   G++ + + + D + E A+  +Q  L G+    IAA   S++   R + +  C
Sbjct:  506 ELGKGEVLCEGGSLAILAVGDPVHPALTAAVQLREEGIYATVVNARFVKPLDRELLLRIVRSFKKILTVEENVLTGGFGSAILEFLEENDI--HGIQVKRLGIRDEFAEQATQAEQRRLYGIDEQGIAAAVRSMMNMGRSSQMEAC 649          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG+G+V  EG D+ ++ YG MV   +    LL + G+  TV +ARF +PLD  L+  L +    ++T+EEG+L GGFG+ V   ++   +L   V    I +PD  ++HASP Q     GLT
Sbjct:  495 IGRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGVKATVINARFLRPLDQALIHPLARRIGRVVTMEEGALAGGFGAAVVESLSDQDVL---VPTFRIGIPDQLVDHASPQQSREALGLT 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NATTJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = -2
Query:  191 KGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 583
            KG+   EG  VA++G G MV + L+   +L K GI+ TV +ARF KPLD   + E+ Q H ++ T EE + LGGFGS V   ++  GL    +      LPD YI H   ++ L+   L    +    L+ L
Sbjct:  494 KGETIREGSQVAMIGVGKMVPDMLEVADMLKKEGIEPTVFNARFVKPLDESSILEIAQKHEYIYTFEENTELGGFGSQVLECLSKHGLAHKLID--RFCLPDEYIPHGDRSKVLSQYSLHSQELINKILNRL 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DECAR (1-deoxy-D-xylulose-5-phosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.719e-15
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +GKG +   GKD+ALL +G++V     A A+ +   +D TVA+ RF KPLD  L+ EL  NH+ L+++EE + +GG GS +   +A  GL    V    + LPD +I+H    Q LA  GL
Sbjct:  490 VGKGDIRRRGKDIALLAFGSLV-----AAAVAAGEELDATVANMRFIKPLDADLIVELAGNHSLLVSIEENAVIGGAGSEIERVLAERGL---QVPVLRLGLPDRFIDHGEQGQLLAELGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_THIDA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 52/122 (42.62%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  230 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 592
            EIGKG     G+DVALL +G++V     A AL +   +D TVAD RF KPLD+ LV EL   H  L+T+EE ++ GG G+ V+  +A  G++   V    + L D +IEH      LA  GL
Sbjct:  487 EIGKGVCRRRGRDVALLAFGSLV-----APALTAAERLDATVADMRFVKPLDVDLVGELAAGHRLLVTLEENAVAGGAGAAVAELLAQLGIV---VPVLQLGLSDVFIEHGDAAAMLAACGL 600          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_PROMA4.525e-1539.021-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS1_GEOSL4.525e-1536.571-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geoba... [more]
DXS_PROMP5.910e-1536.721-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_BURXL5.910e-1542.641-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_ANASK5.910e-1538.131-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_SYNAS7.719e-1534.251-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_PROM37.719e-1538.521-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_NATTJ7.719e-1537.121-deoxy-D-xylulose-5-phosphate synthase OS=Natrana... [more]
DXS_DECAR7.719e-1540.501-deoxy-D-xylulose-5-phosphate synthase OS=Dechlor... [more]
DXS_THIDA1.008e-1442.621-deoxy-D-xylulose-5-phosphate synthase OS=Thiobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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