DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NITMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +G+G++  EG ++ALL +G+M+Q CL+A   L+      TVA+ RF KPLD  LV  L  NH  L+TVEE + +GG GS V   ++  G     V    + LPD +++   P+Q L+  GL
Sbjct:  487 LGRGEIRREGAEIALLAFGSMLQPCLEAAEELN-----ATVANMRFVKPLDDDLVASLAANHELLVTVEENTVMGGAGSAVLESLSARG---RTVPVLQLGLPDTFLDQGDPSQMLSECGL 599          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_NITEU (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrosomonas europaea GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +GKG++  +GK +ALL +G+M+  CL+A   L     D TV + RF KPLD +LV  L   H  L+T+EE + +GG GS V   ++    LD  V+   + LPD++I+   P   L+  GL
Sbjct:  487 LGKGEIRRQGKQIALLAFGSMLTPCLEAGDEL-----DATVVNMRFVKPLDQELVATLAAEHELLVTIEENTIMGGAGSAVMESLS---SLDKNVRLLQLGLPDSFIDQGDPAHMLSDCGL 599          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 47/124 (37.90%), Postives = 75/124 (60.48%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 589
            IGKG +  +GK +A+L +G ++ + L A   L     D TVAD RF KPLD++LV++L ++H  L+TVEE + +GG GS +        LL +    +P++   LPD +I+H +P + ++  GL
Sbjct:  495 IGKGLIKRQGKKIAILNFGTLLASSLTAAEAL-----DATVADMRFVKPLDVELVKQLAESHDMLVTVEENAIMGGAGSGILE------LLQTLKLPKPVLLIGLPDEFIKHGAPDEIISELGL 607          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_GEOTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 46/139 (33.09%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IG  +V  +G D  +L +G  +   L+A   L++ G+ V V +ARF KP+D  ++ EL ++   ++T+EE  L GGFGS V  F    G   + ++   + +PD +IEH S ++ L   GLT  H+A    +++ R ++
Sbjct:  492 IGTWEVLRDGSDAVILTFGTTISMALEAAEQLARDGVSVKVVNARFLKPMDEAMLHELLESRLPILTIEEAVLQGGFGSSVLEFAHDHGYHQAVIE--RMGIPDRFIEHGSVSELLDEIGLTAAHVADRIKTIMPRKQK 628          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CLOPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  215 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 586
            GKG++    +++AL+  G+MV+  +  R  L KLG+  T+ +ARF  PLD +++ +L ++HT  +T+EE    GGFG  VS F+        G+K   I +P+ ++EH   T      GL    I
Sbjct:  491 GKGELIASEEEIALIAIGSMVETAVLVREHLHKLGLKATLVNARFISPLDEEMLHQLTKSHTLFVTMEENVKRGGFGEEVSVFLCEHDY--QGIKHLNISIPNMFVEHGDRTLLKEKLGLDAESI 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BORPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella parapertussis GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 589
            +GKG V  EG+ +A+LG+G +VQ  L A        ID TVAD RF KPLD +LV EL   H  L+TVEE + +GG GS V     L+ L ++GV   P++   LPD +I+H      LA  GL
Sbjct:  490 LGKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAV-----LETLAEAGVT-LPVLQLGLPDAFIDHGDQAALLAGLGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BORBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.933e-14
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 589
            +GKG V  EG+ +A+LG+G +VQ  L A        ID TVAD RF KPLD +LV EL   H  L+TVEE + +GG GS V     L+ L ++GV   P++   LPD +I+H      LA  GL
Sbjct:  490 LGKGLVRREGRRIAILGFGTLVQAALGAAGQ-----IDATVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAV-----LETLAEAGVT-LPVLQLGLPDAFIDHGDQAALLAGLGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.003e-14
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IG+ ++  EG DVA++  GA V    +A  +L++ GI  TV +ARF KPLD  L+ +  +    L+TVEE  L GGFGS V   +A  GLL   ++   + L D + +HAS       AG+    IA+  L+ L
Sbjct:  485 IGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAGLLIPVLR---LGLADRFFDHASQASLRRQAGIDAESIASRTLAFL 615          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_POLSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.003e-14
Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  188 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 586
            GKG++  EG  VA+L +G ++   L+A     KLG  VTV + R+ KPLD +L+ ++  +H  L+T+EEG+ +GG GS V   +   GL   G     + L D +IEH  P + LAL GL    I A  ++  G
Sbjct:  490 GKGEIRREGSGVAILAFGTLLYPALQAA---EKLG--VTVVNMRWAKPLDTELLLKVAASHEALVTLEEGAIMGGAGSAVGEALQAAGL---GKPLLQLGLKDEFIEHGDPAKLLALQGLDAAGIEAAVMARFG 615          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PARUW (1-deoxy-D-xylulose-5-phosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.534e-14
Identity = 44/127 (34.65%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  215 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHI 592
            E+GKG+V +EG ++ ++  G M Q  LK R LL++ GI+ TV D  F KPLD +L  +L  NH  ++T+EE S + G GS +++F+   G   + ++   + +P+ +++H      L   GL    I
Sbjct:  491 ELGKGEVLIEGTEILIVALGHMNQAALKVRDLLAQTGIEATVLDPIFVKPLDSELFCKLLLNHNKIVTIEEHSVVSGMGSIINNFLVGQGF--NQIQVLNLGIPEAFLDHGRNQDLLNEIGLVPEKI 615          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_NITMU1.720e-1439.671-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_NITEU1.720e-1438.841-deoxy-D-xylulose-5-phosphate synthase OS=Nitroso... [more]
DXS_SHEPA2.933e-1437.901-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_GEOTN2.933e-1433.091-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_CLOPH2.933e-1434.401-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_BORPA2.933e-1444.351-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BORBR2.933e-1444.351-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_THERP5.003e-1438.061-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_POLSJ5.003e-1438.061-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_PARUW6.534e-1434.651-deoxy-D-xylulose-5-phosphate synthase OS=Protoch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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