DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_THISH (1-deoxy-D-xylulose-5-phosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 50/134 (37.31%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            +GK ++  +G+ VALL +GA++   L A   L     D TV + RF KPLD  LVRE+ + H  L+T+E+  + GG GS V+  +A+ G+    V    + LPD + EH S  + L+ AGL    I A   + L
Sbjct:  493 VGKAQLRRKGRGVALLAFGAVLPAALAAAEPL-----DATVVNMRFVKPLDEALVREMAEGHDLLVTLEDNVVAGGAGSAVAESLAVQGIT---VPLLHLGLPDRFQEHGSREELLSEAGLDAEGILAAVRARL 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_MOOTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 50/137 (36.50%), Postives = 69/137 (50.36%), Query Frame = -2
Query:  182 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 589
            IGKG+V   G+DV +L  G +    L+A   L+  GI+ TV + RF KPLD  L+         L+TVEE  L GGFGS V   +A +G    G++ R + + D ++    P       GLT   I A   +LL  T
Sbjct:  490 IGKGEVLRRGRDVTILALGPLAYAALEAAGDLAARGIEATVINPRFIKPLDEDLILTWADRTGHLVTVEEHVLAGGFGSAVLELLARNG--RKGIRVRCLGVKDEFVHQGKPAILREHLGLTPAGIRAAVQALLAET 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEON (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella oneidensis GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 48/117 (41.03%), Postives = 66/117 (56.41%), Query Frame = -2
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQ 589
            IGKG +   GK +ALL +G  +     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG GS V        LL      +P++   LPD +I+H SP +
Sbjct:  495 IGKGVIKRLGKRIALLNFGTTL-----AAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGVLE------LLQQLKMPKPVLQIGLPDEFIKHGSPDE 600          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHELP (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = -2
Query:  209 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAA 592
            EIGKG +  EGK +A+L +G  + +  +A   L     D T+AD RF KPLD++LV++L  +H  L+TVEE + +GG GS V   + L   L   +    I LPD +I+H    + LA   L G  I A
Sbjct:  494 EIGKGLIKREGKKIAILNFGTTLASASQAAEAL-----DATLADMRFVKPLDVELVKQLATSHDLLVTVEENAIMGGAGSGV---LELLQQLKLPMPVLNIGLPDEFIKHGECGEILAELQLDGPGIEA 614          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CELJU (1-deoxy-D-xylulose-5-phosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            IGKG V  EGK VALL +G ++     A  +  KLG   ++ D RF KPLD +L+  +  +H+ L+T+EE +L GG GS VS ++   G+    +    +   D +I+H S  QQLA  GL
Sbjct:  499 IGKGVVRREGKQVALLCFGTLLPT---AAQVAEKLG--ASLCDMRFVKPLDSELIARMAASHSLLVTLEENALAGGAGSAVSEYLNSQGI---AIPLLQLGFADEFIDHNSQKQQLAQQGL 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BORA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella avium (strain 197N) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +GKG V   G  +A++G+G +V   L A   L     D TVAD RF KPLD++L+REL   H  L+T+E+ + +GG GS V+  + + GL    +    + LPD +I+H      LA  GL
Sbjct:  490 LGKGVVRRRGARIAIMGFGTLVPAALAAAEKL-----DATVADMRFVKPLDVELLRELAATHEALVTLEDAAVMGGAGSAVTEALNMAGLT---LPVLQLGLPDVFIDHGDQAALLAGVGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS1_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  209 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAA 589
            IGKG++  EG D ALL  G+ V    +A   L+  GID+ V +ARF KPLD  L+  L +    LI VEE  + GGFG+ V   +  +G+  +GVK   +  PD Y+E     +  A  GL    I A
Sbjct:  492 IGKGEILREGLDGALLAIGSTVYPAREAAEALAAEGIDLAVVNARFVKPLDRDLILSLARTTGRLIIVEENVIQGGFGTAVLELLEEEGI--NGVKVLRLGYPDRYVEQGEQHELRAQYGLDAPGITA 617          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHESA (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain ANA-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = -2
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G  +     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG GS V        LL      +P++   LPD +I+H SP +
Sbjct:  495 IGKGVIKRLGKGIAMLNFGTTL-----AAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGVLE------LLQKLKMPKPVLQIGLPDEFIKHGSPEE 600          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROM9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=dxs PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 589
            IG+ ++  EG D+ ++ YG+MV + ++   +L  + I+  + +ARF KPLD  L+  L      ++T+EEG+L GGFGS +   + L    +  +    I +PD  ++HASP Q     GL    +A
Sbjct:  495 IGEAEILEEGNDILIIAYGSMVASAIETAEILKGMNINTCIVNARFVKPLDKNLIIPLASRIQKVVTMEEGTLIGGFGSAI---VELFNDNEVNIPVYRIGIPDVLVDHASPDQSKEKLGLMPDQMA 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROM5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  197 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 589
            IG+G++  +G+D+ ++ YG+MV + ++   LL    I   V +ARF +PLD  L+  L      ++T+EEG+L GGFGS +   + L    D  +    I +PD  ++HASP Q     GL  + ++   ++
Sbjct:  495 IGEGEILEDGEDILIVAYGSMVSSAIETSKLLKDKNISPCVINARFVRPLDKDLILPLANKIKKVVTMEEGTLIGGFGSAI---VELLNDNDINIPVFRIGIPDVLVDHASPDQSKTQLGLMPNQMSENIIN 623          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_THISH3.243e-1337.311-deoxy-D-xylulose-5-phosphate synthase OS=Thioalk... [more]
DXS_MOOTA4.236e-1336.501-deoxy-D-xylulose-5-phosphate synthase OS=Moorell... [more]
DXS_SHEON5.532e-1341.031-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHELP5.532e-1339.531-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_CELJU5.532e-1339.671-deoxy-D-xylulose-5-phosphate synthase OS=Cellvib... [more]
DXS_BORA15.532e-1338.841-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS1_GEOMG5.532e-1339.061-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geoba... [more]
DXS_SHESA7.225e-1340.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PROM97.225e-1333.071-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PROM57.225e-1332.581-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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