DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHESR (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-7) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G  +     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG GS V        LL      +P++   LPD +I+H SP +
Sbjct:  495 IGKGVIKRLGKRIAMLNFGTTL-----AAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGVLE------LLQKLKMPKPVLQIGLPDEFIKHGSPEE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain MR-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G  +     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG GS V        LL      +P++   LPD +I+H SP +
Sbjct:  495 IGKGVIKRLGKRIAMLNFGTTL-----AAALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHDVLVTVEENAIMGGAGSGVLE------LLQKLKMPKPVLQIGLPDEFIKHGSPEE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQ 589
            IGKG +  +G+ +A+L +G  + N L A         D TVAD RF KPLD+ L++EL + H  L+TVEE + +GG GS V   +    L    ++   I LPD +I+H +P +
Sbjct:  495 IGKGLIKRQGQKIAILNFGTTLANSLVAAE-----AFDATVADMRFVKPLDVDLIKELAETHDVLVTVEENAIMGGAGSGVLELLQTLKLPKPVLQ---IGLPDEFIKHGAPDE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEB9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS195) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWR------PIVLPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G ++     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG G+         G+L+   K R       I LPD +I+H SP +
Sbjct:  495 IGKGVIKRVGKRIAILNFGTLL-----ASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA---------GVLEQLQKLRMPKAVLQIGLPDEFIKHGSPEE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEB8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS185) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWR------PIVLPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G ++     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG G+         G+L+   K R       I LPD +I+H SP +
Sbjct:  495 IGKGVIKRVGKRIAILNFGTLL-----ASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA---------GVLEQLQKLRMPKAVLQIGLPDEFIKHGSPEE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEB5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWR------PIVLPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G ++     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG G+         G+L+   K R       I LPD +I+H SP +
Sbjct:  495 IGKGVIKRVGKRIAILNFGTLL-----ASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA---------GVLEQLQKLRMPKAVLQIGLPDEFIKHGSPEE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEB2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella baltica (strain OS223) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = -2 
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWR------PIVLPDNYIEHASPTQ 589
            IGKG +   GK +A+L +G ++     A AL +   +D TV D RF KPLD+ LV+E+ Q H  L+TVEE + +GG G+         G+L+   K R       I LPD +I+H SP +
Sbjct:  495 IGKGVIKRVGKRIAILNFGTLL-----ASALTAAESLDATVVDMRFVKPLDVDLVKEMAQTHEVLVTVEENAIMGGAGA---------GVLEQLQKLRMPKAVLQIGLPDEFIKHGSPEE 600
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEAM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/121 (38.84%), Postives = 70/121 (57.85%), Query Frame = -2 
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            IGKG +  +G+ +A+L +G  +     A AL +   ++ TVAD RF KPLD  L+ EL  +H  L+TVEE + +GG GS V  F+A    L   ++   I +PD +I+H  P + L+  GL
Sbjct:  495 IGKGVMRRQGQKIAILNFGTTL-----AAALTAAESLNATVADMRFVKPLDEALLLELAASHDVLVTVEENAIMGGAGSGVLEFLASKNRLKPLLQ---IGIPDEFIKHGGPEEILSELGL 607
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RALEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = -2 
Query:  230 IGKGKVFVEG-----KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 589
            +GKG +  EG       V  L +G+MV   L A   L     D  VAD RF KPLD++LV+ L   + +L+TVEEGS +GG GS V     L+ L ++G+  +P++   LPD +++H  P   L   GL
Sbjct:  494 VGKGVMRREGGARAGHRVGFLAFGSMVHPALGAAEAL-----DAAVADMRFVKPLDVELVKRLAAENDYLVTVEEGSVMGGAGSAV-----LEALAEAGID-KPVLTLGLPDRFVDHGDPAYLLQQCGL 611
[Close]
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PROM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = -2 
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 589
            IG+ ++   G+D+ ++ YG+MV + ++   +L  + I+  + +ARF KPLD  L+  L      ++T+EEG+L GGFGS +   + L    +  +    I +PD  ++HASP Q     GL    +A
Sbjct:  495 IGEAEIIEGGEDILIIAYGSMVASAIETAKILKNMNINACIVNARFVKPLDKNLIMPLASRIQKVVTMEEGTLIGGFGSAI---VELFNDNEINIPVYRIGIPDVLVDHASPDQSKEKLGLMPDQMA 618
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_SHESR9.436e-1340.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHESM9.436e-1340.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEPW9.436e-1338.601-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB99.436e-1339.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB89.436e-1339.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB59.436e-1339.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEB29.436e-1339.171-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEAM9.436e-1338.841-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_RALEH1.232e-1238.761-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PROM01.232e-1232.281-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
back to top