DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 52/133 (39.10%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  176 GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 562
            G+ +A+L +G ++   L A   L     D TVA+ RF KPLD +LV  L ++H  L+TVEEG L GG GS V     L+ L  +GV   P++   LPD ++EH  P + LA  GL    I  + L   G   E
Sbjct:  502 GRRIAILAFGTLLYPALAAAEKL-----DATVANMRFIKPLDTELVLSLARSHEALVTVEEGCLQGGAGSAV-----LEALQAAGVN-LPVLTLGLPDEFVEHGDPAKLLAQLGLDAAGIEQSILKRFGAKLE 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus subtilis GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPI---VLPDNYIEHASPTQQLALAGLTGHHIA 589
            IG  +V   G D  +L +G  ++  ++A   L K G+ V V +ARF KP+D K+++ + +    ++T+EE  L GGFGS +  F       D G    PI    +PD +IEH S T  L   GLT   +A
Sbjct:  492 IGTWEVLRPGNDAVILTFGTTIEMAIEAAEELQKEGLSVRVVNARFIKPIDEKMMKSILKEGLPILTIEEAVLEGGFGSSILEFAH-----DQGEYHTPIDRMGIPDRFIEHGSVTALLEEIGLTKQQVA 616          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHESW (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sp. (strain W3-18-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = -2
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQ 589
            IGKG +   GK +ALL +G  +     A AL +   +D TV D RF KPLD +LV E+ Q H  L+TVEE + +GG GS V        LL      +P++   LPD +I+H SP +
Sbjct:  495 IGKGVIKRVGKRIALLNFGTTL-----ASALTAADNLDATVVDMRFVKPLDAELVTEMAQTHDILVTVEENAIMGGAGSGVLE------LLQKLKMPKPVLQIGLPDEFIKHGSPEE 600          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEPC (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = -2
Query:  251 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQ 589
            IGKG +   GK +ALL +G  +     A AL +   +D TV D RF KPLD +LV E+ Q H  L+TVEE + +GG GS V        LL      +P++   LPD +I+H SP +
Sbjct:  495 IGKGVIKRVGKRIALLNFGTTL-----ASALTAADNLDATVVDMRFVKPLDAELVTEMAQTHDILVTVEENAIMGGAGSGVLE------LLQKLKMPKPVLQIGLPDEFIKHGSPEE 600          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PHOPR (1-deoxy-D-xylulose-5-phosphate synthase OS=Photobacterium profundum GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = -2
Query:  248 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQ 592
            EIGKG +  +G+ +A+L +G M++  L+A   L+      TVAD RF KPLD +L+ EL  NH  L+TVEE ++ GG GS V  F+     L   +    I LPD ++E    TQQ
Sbjct:  493 EIGKGIIRRQGEKIAILNFGTMLEYALEAAEKLN-----ATVADMRFVKPLDEELILELAANHDVLVTVEENAIAGGAGSGVIEFMMKSKCLKPVLN---IGLPDRFVEQG--TQQ 598          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PELCD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 49/138 (35.51%), Postives = 70/138 (50.72%), Query Frame = -2
Query:  179 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTR 589
            IGKG+   +G D  +   G + +  L A  +L+  G+ V V D RF KPLD +L+    +    ++TVEE    GGFGS V   +A +GL    V+   I LPD +IE  +  Q  A  GL    IAA+  + +   R
Sbjct:  491 IGKGEKLRDGSDAVIFALGVVCKEALVASDILAGEGLSVAVVDPRFLKPLDQQLLIAEARRTGVVVTVEENVRQGGFGSAVLEMLADEGL---AVRVLRIGLPDRFIEQGTQQQLYARYGLDAEGIAASVRNFMHHDR 625          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DESPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea psychrophila GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = -2
Query:  191 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 592
            EIG+G++  EG D+ LL  G  V   ++A   L+K GI  +V + RF KPLD +L+ +  +    +IT+E+ +L  GFGS V   ++   L   G+K + +  P  ++EH         +G+T   I   AL LL
Sbjct:  502 EIGRGELLREGDDILLLPIGNRVYPAMRAAEELAKQGISASVINPRFIKPLDAELICQQAKKTGRIITIEDNTLCSGFGSAVLELLSQKSLY--GIKTKILGHPHAFVEHGPQKTLWENSGITSRGIIMAALDLL 634          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_LEPCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = -2
Query:  209 GKGKV------FVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAA 586
            G+G+V       V G  +A+L +G ++   L A   L     D TVA+ RF KPLD  LV +L + H  L+TVEEG L GG GS V     L+ L  +G++  P++   LPD +IEH  P   LA  GL    I A
Sbjct:  495 GRGEVRRQAGGHVRGPRIAILAFGTLLYPALAAAEKL-----DATVANMRFIKPLDAALVEQLARTHDALVTVEEGCLMGGAGSAV-----LEALQAAGLQ-TPVLTLGLPDQFIEHGDPALLLAACGLDSAGIEA 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus pumilus (strain SAFR-032) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 48/134 (35.82%), Postives = 69/134 (51.49%), Query Frame = -2
Query:  191 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 589
            IG  +V   GKD  +L +G  ++  L+A   L K G  V V +ARF KPLD  ++ ++      ++T+EE  L GGFGS V  +I       S +K   + +PD +IEH S    L   GLT   +A T   +L
Sbjct:  492 IGSWEVLHPGKDAVILTFGTTIKMALQAAEELQKEGKSVRVVNARFIKPLDEAMLNDILSEGIPILTIEEAVLQGGFGSSVLEYI--HDKKASHIKVERMGIPDEFIEHGSVDALLEEIGLTKVQVADTLRDML 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ACTPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  230 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 592
            E+GKGK+  +G+ VA+L +G ++    +AR +  K   + T+AD RF KPLD +LV EL  +H  L+T+EE ++ GG GS V+ ++   G      K RP+V   +PD ++  A+  +  A  GL
Sbjct:  489 EVGKGKLIQQGQKVAILNFGPLLN---EARIVAEKH--NYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIG------KIRPLVMLGIPDFFVPQATQAESYADLGL 602          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_METPP1.232e-1239.101-deoxy-D-xylulose-5-phosphate synthase OS=Methyli... [more]
DXS_BACSU1.232e-1235.381-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_SHESW1.609e-1241.031-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_SHEPC1.609e-1241.031-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_PHOPR1.609e-1241.381-deoxy-D-xylulose-5-phosphate synthase OS=Photoba... [more]
DXS_PELCD1.609e-1235.511-deoxy-D-xylulose-5-phosphate synthase OS=Pelobac... [more]
DXS_DESPS1.609e-1234.071-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_LEPCP2.102e-1239.711-deoxy-D-xylulose-5-phosphate synthase OS=Leptoth... [more]
DXS_BACP22.102e-1235.821-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_ACTPJ2.102e-1237.601-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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