DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ACTP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  230 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 592
            E+GKGK+  +G+ VA+L +G ++    +AR +  K   + T+AD RF KPLD +LV EL  +H  L+T+EE ++ GG GS V+ ++   G      K RP+V   +PD ++  A+  +  A  GL
Sbjct:  489 EVGKGKLIQQGQKVAILNFGPLLN---EARIVAEKH--NYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIG------KIRPLVMLGIPDFFVPQATQAESYADLGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_ACTP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 47/125 (37.60%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  230 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 592
            E+GKGK+  +G+ VA+L +G ++    +AR +  K   + T+AD RF KPLD +LV EL  +H  L+T+EE ++ GG GS V+ ++   G      K RP+V   +PD ++  A+  +  A  GL
Sbjct:  489 EVGKGKLIQQGQKVAILNFGPLLN---EARIVAEKH--NYTLADMRFVKPLDEQLVAELADSHELLVTLEENAIQGGAGSAVNEYLQKIG------KIRPLVMLGIPDFFVPQATQAESYADLGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = -2
Query:  185 DVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 556
            DV L+  GA+   CL+   LL+K GI  TV D R+ KP+D + +  L + H  ++TVE+ S +GG GS V+       L D+G  V  R   +P  +++HAS  + LA  GLT   IA     L+ R
Sbjct:  502 DVLLVSVGALAPMCLEVADLLNKQGISTTVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGSAVA-----QALRDAGVDVPLRDFGIPPRFLDHASRAEVLAEIGLTAPDIARQVTGLVAR 622          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBVY (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  260 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHAS 592
            EIGKG++  +G+ VA+L +G  + N L+A   L+      TVAD RF KPLD  L+R+L   H  LIT+EE ++ GG G+ V  F+  + ++      +P++   LPD +I   +
Sbjct:  493 EIGKGRLVRQGEKVAILSFGTFLANALEAAEALN-----ATVADMRFVKPLDEALIRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIM------KPVLNLGLPDKFIHQGT 596          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG+V  +G+ VA+L +G  + N L+A        ++ TVAD RF KPLD  L+R+L   H  L+T+EE ++ GG G+ V  F+  + ++      +P++   LPD +I   +  +     GL    I  +    L +
Sbjct:  493 EIGKGRVVRKGEKVAILSFGTFLPNALEAAK-----NLNATVADMRFVKPLDEALIRQLADEHDVLVTLEENAIAGGAGAGVIEFMMKEKII------KPVLNLGLPDKFIHQGTQEELHEELGLDAKGIEKSIAEYLAK 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_WIGBR (1-deoxy-D-xylulose-5-phosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +GKG V  +GK +A+L +G ++   ++A  +  +L  D T+ D RF KPLD  L+  + + H  LIT+EE   +GG GS V+ FI  + LL   V    I +PDN++ H S T+  +  GL
Sbjct:  497 LGKGIVLRKGKKIAILNFGVLL---IQANIVAKEL--DATLVDMRFVKPLDNLLLIRMAKTHKALITIEENVIMGGAGSAVNEFIMYNKLL---VPVLNIGIPDNFVSHGSQTEVRSSLGL 609          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  224 EIGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTG 592
            EIGKG++       EG+ VA+L +G ++ N L+A   L+      TVAD RF KPLD  L+++L Q H  L+T+EE ++ GG G+ V  F+  +  L      +P++   LPD +I   +  +  A  GL G
Sbjct:  493 EIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLN-----ATVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQL------KPVLNLGLPDQFIVQGTQEEMHAELGLDG 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  224 EIGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTG 592
            EIGKG++       EG+ VA+L +G ++ N L+A   L+      TVAD RF KPLD  L+++L Q H  L+T+EE ++ GG G+ V  F+  +  L      +P++   LPD +I   +  +  A  GL G
Sbjct:  493 EIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLN-----ATVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQL------KPVLNLGLPDQFIVQGTQEEMHAELGLDG 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBC3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = -2
Query:  224 EIGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTG 592
            EIGKG++       EG+ VA+L +G ++ N L+A   L+      TVAD RF KPLD  L+++L Q H  L+T+EE ++ GG G+ V  F+  +  L      +P++   LPD +I   +  +  A  GL G
Sbjct:  493 EIGKGRLMRESTACEGEKVAILSFGTLLPNALQAAEKLN-----ATVADMRFVKPLDEALIKQLAQTHDVLVTLEENAIAGGAGAGVIEFLMKEKQL------KPVLNLGLPDQFIVQGTQEEMHAELGLDG 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEWM (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  242 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA 589
            IGKG +  +G+ VA+L +G ++ + L A   L     D TVAD RF KPLD++L++EL  +H  L+TVEE + +GG GS V   + L   L   +    + LPD +I+H    + +A
Sbjct:  495 IGKGLIKRQGQKVAILNFGTLLASVLTAGESL-----DATVADMRFVKPLDVELIKELANSHDVLVTVEENAIMGGAGSGV---LELLQQLKQPMPVLQLGLPDEFIKHGDSGEIIA 603          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_ACTP72.102e-1237.601-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_ACTP22.102e-1237.601-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS2_STRCO2.102e-1237.801-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_VIBVY2.745e-1237.391-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBPA2.745e-1232.861-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_WIGBR3.586e-1238.021-deoxy-D-xylulose-5-phosphate synthase OS=Wiggles... [more]
DXS_VIBCM3.586e-1236.361-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBCH3.586e-1236.361-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_VIBC33.586e-1236.361-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_SHEWM3.586e-1238.461-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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