DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PARD8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 589
            IGKGK   +G D+A+L  G +    +KA  ++ +  + +   D  + KPLD +L+ E+ Q +  +ITVE G + GGFGS V  F+A +G        + I +PD +IEH S  +   L G+    IA
Sbjct:  502 IGKGKKLRDGDDIAVLSIGPIGNEVIKAIEMVKEERVSIAHYDMIYLKPLDEELLHEIGQKYNRIITVENGVIKGGFGSAVLEFMADNGYTP---HVKRIGVPDAFIEHGSIPELYQLCGMDAESIA 625          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBVU (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio vulnificus GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  260 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHAS 592
            EIGKG++  +G+ VA+L +G  + N L+A   L+      TVAD RF KPLD  L+R+L   H  LIT+EE ++ GG G+ V  F+  + ++      +P++   LPD +I   +
Sbjct:  493 EIGKGRLVRQGEKVAILSFGTFLANALEAAEALN-----ATVADMRFVKPLDEALLRQLANEHDVLITIEENAIAGGAGAGVIEFMMQEKIM------KPVLNLGLPDKFIHQGT 596          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAEPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = -2
Query:  194 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATALSL 592
            EIGKGKV  +G+ VA+L +GA++    +     +      T+ D RF KPLD  L+ EL   H  L+T+EE +L GG GS V+ ++   G      K +P++   +PD +I  A+  +  A  GL    I    LS+
Sbjct:  489 EIGKGKVLKQGEKVAILNFGALLNEAKQVAETHN-----YTLVDMRFAKPLDEALIAELADRHELLVTLEENALQGGAGSAVNEYLQHIG------KIKPLLMLGIPDFFIPQATQAESYADLGLDAKGIEQKILSM 614          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CHLTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = -2
Query:  197 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 586
            G+ ++  +G D+ L+  G M    L  +  L   GI  TV D  F KPLD KL++ L  +H+ +I +EE S+ GG GS    F+    +    +    + +PD +I H +P   L L GLT  HI    LS
Sbjct:  497 GEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVLS---LGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CHLTB (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = -2
Query:  197 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 586
            G+ ++  +G D+ L+  G M    L  +  L   GI  TV D  F KPLD KL++ L  +H+ +I +EE S+ GG GS    F+    +    +    + +PD +I H +P   L L GLT  HI    LS
Sbjct:  497 GEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVLS---LGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CHLTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = -2
Query:  197 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 586
            G+ ++  +G D+ L+  G M    L  +  L   GI  TV D  F KPLD KL++ L  +H+ +I +EE S+ GG GS    F+    +    +    + +PD +I H +P   L L GLT  HI    LS
Sbjct:  497 GEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVLS---LGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CHLT2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = -2
Query:  197 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 586
            G+ ++  +G D+ L+  G M    L  +  L   GI  TV D  F KPLD KL++ L  +H+ +I +EE S+ GG GS    F+    +    +    + +PD +I H +P   L L GLT  HI    LS
Sbjct:  497 GEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVLS---LGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BORPD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            +GKG V  +G+ +A+L +G + Q  L A   L     D TVAD RF KP+D +L+ +L   H  ++TVEE + +GG GS V   +  +G++   V    + LPD +I+H      LA  GL
Sbjct:  490 MGKGIVRRQGRGIAILAFGTLTQAALAAAEAL-----DATVADMRFVKPIDRELILQLAAGHDAIVTVEEAAIMGGAGSAVIEVLHHEGVV---VPVLQLGLPDRFIDHGDQAALLAGLGL 602          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACHK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACCZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_PARD83.586e-1235.431-deoxy-D-xylulose-5-phosphate synthase OS=Parabac... [more]
DXS_VIBVU4.683e-1237.391-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_HAEPS4.683e-1235.041-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_CHLTR4.683e-1234.351-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTB4.683e-1234.351-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTA4.683e-1234.351-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLT24.683e-1234.351-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_BORPD4.683e-1237.191-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_BACHK4.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACCZ4.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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