DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACC7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain AH187) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACC1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain ATCC 10987) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACC0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain AH820) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus anthracis GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACAC (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACAA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus anthracis (strain A0248) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGSWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBHB (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  272 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYI 592
            EIGKG++  +G+ VA+L +G  + N L+A        ++ TVAD RF KPLD  L+R+L   H  L+T+EE ++ GG G+ V  F+  D ++      +P++   LPD ++
Sbjct:  493 EIGKGRIVRKGEKVAILSFGTFLGNALEAAE-----NLNATVADMRFVKPLDEALIRQLAAEHDVLVTLEENAIAGGAGAGVIEFMMQDKII------KPVLNLGLPDRFV 592          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RHOFD (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 45/128 (35.16%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  206 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT 586
            G+G++   G  VA+L +G ++   L+    L+     VTV + R+ KPLD+ L+ ++  +H  L+TVEEG+ +GG GS V   +   G+L   ++   + L D +IEH  P + LAL GL    I A+
Sbjct:  493 GQGEIRRAGSSVAILAFGTLLHPALQVAEKLN-----VTVVNMRWVKPLDVALLLQVAADHDALVTVEEGAIMGGAGSAVLEALQAAGVLKPVLQ---LGLRDEFIEHGDPAKLLALQGLDAAGIQAS 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_METFK (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  209 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAA 589
            IGKG++  +G  VA+L +G+M+   L+A   L     D TVA+ RF KPLD  L+ +L  +HT ++TVEE + +GG G+ V   +      D       + LPD +IEH      LA  GL    I A
Sbjct:  487 IGKGELRRQGSWVAILAFGSMLAPALEAAETL-----DATVANMRFVKPLDANLINQLASSHTLIVTVEENAVMGGAGAAVMECMQ---AADIHTPVLCLGLPDMFIEHGVHETMLAECGLNAAGIIA 606          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFG+ V  F + +G   + V+   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGTWETLKEGTQAAILTFGTTIPMAMEAAERLEKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALVE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_BACC74.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACC14.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACC04.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACAN4.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACAC4.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACAA4.683e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_VIBHB6.116e-1236.941-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_RHOFD6.116e-1235.161-deoxy-D-xylulose-5-phosphate synthase OS=Rhodofe... [more]
DXS_METFK6.116e-1237.501-deoxy-D-xylulose-5-phosphate synthase OS=Methylo... [more]
DXS_BACCR6.116e-1235.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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