DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DESDG (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfovibrio desulfuricans (strain G20) GN=dxs PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLK-ARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            E G+G++  +G DVA++  G+ V   L  A  +    G  V+V +ARF KPLD + +  L ++H  L+ +EE  + GGF S V   +A    L +GV  R + LPD+++ H +  Q   L G+    I  T L +LG
Sbjct:  500 EHGRGELLKKGADVAVIAVGSRVHPALAVAEEIERSTGKAVSVFNARFVKPLDAEQLVALARSHDSLLLLEENTTTGGFSSGVLELLADHDCL-AGVHVRRLGLPDDFVTHGTQKQLRKLTGIDRAAIRRTLLEMLG 635          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACWK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A+L +G  +   ++A   L + G+ V V +ARF KP+D   + EL   +  ++T+EE  L GGFG+ V  F + +G   + ++   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGTWETLKEGTQAAILTFGTTIPMAMEAAERLEQAGVSVKVVNARFIKPMDEAYLHELLGKNIPILTIEEACLIGGFGTGVVEFASENGYHSALIE--RMGIPDRFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  227 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLT 589
            IG  +   EG   A++ +G  +   ++A   L K G+ V V +ARF KP+D   + +L   +  ++T+EE  L GGFGS V  F A  G   + ++   + +PD +IEH S T+ L   GLT
Sbjct:  492 IGTWETLREGTQAAIVTFGTTIPMAMEAAERLGKAGVSVKVVNARFIKPMDEAYLHDLLGKNIPILTIEEACLIGGFGSGVMEFAAEHGYHSALIE--RMGIPDYFIEHGSVTKLLEEIGLT 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces avermitilis GN=dxs2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  185 EGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 565
            +  DV L+  GA+   CL+   LL K GI  TV D R+ KP+D + +  L + H  ++TVE+ S +GG GS ++       L D+G  V  R   +P  +++HAS  + +A  GLT   IA     L+ +
Sbjct:  499 DAPDVLLVSVGALAPMCLEIAGLLDKQGISATVVDPRWVKPVD-EAMAPLAERHRVVVTVEDNSRVGGVGSAIA-----QALRDAGVDVPLRDFGIPPRFLDHASRGEVMAEIGLTAPDIARQVTGLVSK 622          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBF1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  248 EIGKG------KVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQ 592
            EIGKG      KV  +G+ VA+L +G  + N L+A   L     D TVAD RF KPLD  L+ EL  NH  L+T+EE ++ GG GS V  F+  + L+   ++   + LPD +I  A  TQ+
Sbjct:  493 EIGKGRLLRETKVTEKGERVAILNFGTFLANSLEAAEKL-----DATVADMRFAKPLDEALICELVTNHDVLVTIEENAISGGAGSGVIEFLMKNRLVKPVLQ---LGLPDEFI--AQGTQE 604          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_POLNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = -2
Query:  188 GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 586
            GKG++  EG  +A+L +G ++   L+A     KLG   TV + R+ KPLD +L+ ++   H  L+T+EEG+ +GG GS V   +   G++   ++   + L D +IEH      LAL GL    I A   S  G
Sbjct:  494 GKGEIRREGSGIAILAFGTLLYPALQAA---EKLG--ATVVNMRWAKPLDTELLLKVAAGHEVLVTLEEGAIMGGAGSAVGEALQAAGVVKPLLQ---LGLKDEFIEHGEVAVLLALQGLDAAGIEAAVRSRFG 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VIBFM (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio fischeri (strain MJ11) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 49/122 (40.16%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  248 EIGKGKVFVE------GKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQ 592
            EIGKG++  E      G+ VA+L +G  + N L+A   L     D TVAD RF KPLD  L+ EL  NH  L+T+EE ++ GG GS V  F+  + L+   ++   + LPD +I  A  TQ+
Sbjct:  493 EIGKGRLLRETKVTDKGERVAILNFGTFLANSLEAAEKL-----DATVADMRFAKPLDEALICELVTNHDVLVTIEENAISGGAGSGVIEFLMKNRLVKPVLQ---LGLPDEFI--AQGTQE 604          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PHOLL (1-deoxy-D-xylulose-5-phosphate synthase OS=Photorhabdus luminescens subsp. laumondii GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = -2
Query:  230 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGL 589
            IGKG +  +G  VA+L +G ++ + + A   L     D TV D RF KPLD +L+ ++  NH  L+T+EE + +GG GS V+  +   G L   V+   I LPD ++   S  +  A  GL
Sbjct:  494 IGKGVIRRQGNKVAILNFGTLLPDAITAAESL-----DATVVDMRFVKPLDKELILDMADNHDLLVTLEENAIMGGAGSGVNELLMQKGRL---VQILNIGLPDQFVPQGSQEEIKADLGL 606          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAES2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus somnus (strain 2336) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = -2
Query:  242 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA 589
            +GK K+  +GK++A+L +G ++    K         +D TV D RF KPLD + ++E+ Q H+ ++T+EE ++ GG GS V+  +         V    + LPDN+I   +  + LA
Sbjct:  489 LGKSKLIRQGKNIAILNFGTLLSEATKVAE-----DLDATVVDMRFVKPLDTQRIQEIAQTHSLIVTLEENAIQGGAGSAVAETLYQQ---QQKVSLLQLGLPDNFIPQGTQKEMLA 597          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAES1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus somnus (strain 129Pt) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 38/117 (32.48%), Postives = 64/117 (54.70%), Query Frame = -2
Query:  242 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLA 589
            +GK K+  +GK++A+L +G ++    K         +D TV D RF KPLD + ++E+ Q H+ ++T+EE ++ GG GS V+  +         V    + LPDN+I   +  + LA
Sbjct:  489 LGKSKLIRQGKNIAILNFGTLLSEATKVAE-----DLDATVVDMRFVKPLDTQRIQEIAQTHSLIVTLEENAIQGGAGSAVAETLYQQ---QQKVSLLQLGLPDNFIPQGTQKEMLA 597          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_DESDG1.043e-1135.041-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_BACWK1.043e-1134.431-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACCN1.043e-1135.251-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS2_STRAW1.363e-1134.621-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_VIBF11.780e-1140.981-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_POLNA1.780e-1135.071-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_VIBFM2.324e-1140.161-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_PHOLL2.324e-1136.361-deoxy-D-xylulose-5-phosphate synthase OS=Photorh... [more]
DXS_HAES22.324e-1132.481-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_HAES12.324e-1132.481-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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