DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAEIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGK ++  +G+ +A+L +G ++ + L+   L  KL  + TV D RF KP+DI+++  L Q H +L+T+EE ++ GG GS V+  +   G          + LPD +I  A+  + LA  GL    I    L+ + +
Sbjct:  494 IGKSRLIRKGQKIAILNFGTLLPSALE---LSEKL--NATVVDMRFVKPIDIEMINVLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSG---KSTALLQLGLPDYFIPQATQQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAEIE (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain PittEE) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGK ++  +G+ +A+L +G ++ + L+   L  KL  + TV D RF KP+DI+++  L Q H +L+T+EE ++ GG GS V+  +   G          + LPD +I  A+  + LA  GL    I    L+ + +
Sbjct:  494 IGKSRLIRKGQKIAILNFGTLLPSALE---LSEKL--NATVVDMRFVKPIDIEMINVLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSG---KSTALLQLGLPDYFIPQATQQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_AERS4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Aeromonas salmonicida (strain A449) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = -2
Query:  206 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAAT 592
            E+GKG++   GK  A+L +G ++Q   +ARA    L  D T+ D RF KP+D  LV  L  +H   +T+E+ + +GG GS      A++ LL    + +P++   LPD ++E  +  +  AL GL    I A+
Sbjct:  493 ELGKGRIVRNGKGTAILAFGTLLQ---QARAAAEAL--DATLVDMRFVKPMDEALVLSLAASHDQFVTIEDNAIMGGAGS------AVNELLMRNKQCKPVLNLGLPDRFVEQGTQEEIYALLGLDSTGIQAS 614          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_STRMK (1-deoxy-D-xylulose-5-phosphate synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 50/134 (37.31%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  200 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATAL 589
            IGKG++ ++G  +ALL +G+ V     A  +  +LG+  +V + RF KPLD +LV  +   H  L+T+E+  + GG GS V   +  +G+L      RPI+   LPD+Y  HAS    LA AG+    I A  L
Sbjct:  496 IGKGELRLQGSRIALLAFGSTVA---AAEQVGRELGL--SVVNMRFIKPLDRELVLAVAAQHEGLVTIEDNVVAGGAGSGVGELLNAEGVL------RPILHLGLPDSYQHHASREDLLAEAGIDAAGIRAAVL 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_HAEI8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain 86-028NP) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 44/136 (32.35%), Postives = 74/136 (54.41%), Query Frame = -2
Query:  185 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 589
            IGK ++  +G+ +A+L +G ++ + L+   L  KL  + TV D RF KP+DI+++  L Q H +L+T+EE ++ GG GS V+  +   G          + LPD +I  A+  + LA  GL    I    L+ + +
Sbjct:  494 IGKSRLIRKGQKIAILNFGTLLPSALE---LSEKL--NATVVDMRFVKPIDIEMINVLAQTHDYLVTLEENAIQGGAGSAVAEVLNSSG---KSTALLQLGLPDYFIPQATRQEALADLGLDTKGIEEKILNFIAK 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SHEDO (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  209 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAA 589
            IGKG+V  +GK +A+L +G  + + L+    L     D +VAD RF KPLD+ L+  L   H  ++T+EE + +GG GS V   +    +    ++   I LPD +I+H +P + +A   L    I A
Sbjct:  495 IGKGRVCRQGKKIAILNFGTTLASALEVAEQL-----DASVADMRFIKPLDVDLLHTLALEHDVIVTIEENAIMGGAGSGVIEALHKLKICKPVLQ---IGLPDEFIKHGAPDEIIAELRLDSKGILA 614          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CYTH3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = -2
Query:  188 FEEI--GKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 598
            FEEI  GKG+   +G DVA+L  G +    ++A+ALL +  +     D RF KP+D +++  + +    +ITVE+G L GGFGS V  F+A +      ++   + +PD  +EH    +     G     IA T  +L G
Sbjct:  496 FEEITIGKGRKVSDGDDVAILSIGHIGNYVIEAKALLREEELSPAHFDMRFVKPIDEEMLHLVFKKFKKIITVEDGCLMGGFGSAVLEFMADNNYAAQVIR---LGIPDRIVEHGEQAELHKECGFDPQSIARTVRNLSG 632          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BACHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus halodurans GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IG  +V  EG D  +L +G M+    +A   LS+ G  + + +AR  KPLD  ++ E+ ++   ++T+EE ++ G FGS V  F    G     V  + + +PD +IEH S ++ L   GLT   +A     LL R ++
Sbjct:  491 IGSWEVLQEGTDACILTFGTMIPVAEQASKELSQQGYSIRLINARSVKPLDEAMLHEIAKSGRPVLTLEETAVQGSFGSAVLEFFHDHGY--HNVVTQRMGIPDRFIEHGSVSELLEEIGLTSSQVANQLSKLLPRKQK 627          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_VEREI (1-deoxy-D-xylulose-5-phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  209 VALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAA 553
            +A+L +G+++   L+A   L     D TV + R+ KPLD  L+R++ + H  L+T+EEG+ +GG GS V+  +   G+L      RP++   L D +IEH  P + LA+ GL    I A
Sbjct:  511 IAILAFGSLLYPALEAADAL-----DATVVNMRWAKPLDDALLRQVAEGHDALVTLEEGAIMGGAGSAVTETLNAAGIL------RPVLQLGLADIFIEHGDPAKLLAMQGLNAAGIRA 618          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = -2
Query:  266 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEH 592
            E G+ ++  EG+D+A++  G  V        LL+  G++  + DARF KPLD +++    Q +  L+T+E+ SL GGFGS +   +  +G+     +   I LPD ++EH
Sbjct:  489 EPGQSRLIAEGQDLAIIAVGRGVSIARDVVDLLAGKGVNPLLVDARFVKPLDRRVIAGAAQKYHRLLTIEDNSLAGGFGSAIGEMLVEEGI---DAELLHIALPDEFVEH 595          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_HAEIN2.324e-1132.351-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_HAEIE2.324e-1132.351-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_AERS42.324e-1134.591-deoxy-D-xylulose-5-phosphate synthase OS=Aeromon... [more]
DXS_STRMK3.035e-1137.311-deoxy-D-xylulose-5-phosphate synthase OS=Stenotr... [more]
DXS_HAEI83.035e-1132.351-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_SHEDO3.964e-1134.381-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_CYTH33.964e-1133.571-deoxy-D-xylulose-5-phosphate synthase OS=Cytopha... [more]
DXS_BACHD5.178e-1132.371-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_VEREI6.762e-1136.131-deoxy-D-xylulose-5-phosphate synthase OS=Vermine... [more]
DXS_SYNWW6.762e-1133.641-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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