DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RALSO (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia solanacearum GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = -2
Query:  206 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT 592
            E+ +      G+ V +L +G+MV     A A  +   +D TV + RF KPLD   V E+ + H +++TVEEG  +GG GS     +A  G+    ++   + LPD +++H      LAL GL  + I A+
Sbjct:  498 EVRRASTAPAGQRVVILAFGSMV-----APAAAAAERLDATVVNMRFVKPLDAACVLEMARTHDYVVTVEEGCVMGGAGSACLEALAAAGVATPVLQ---LGLPDRFVDHGDHAALLALCGLDANGILAS 619          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEA6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGK +   +G+ VA+L +G ++    KA  +L+      TV D RF KPLD + V  + +NH  LIT+E+G + GG G  V+ ++ L  +  S  +   I LPD +I   + T+  A  G+    I A A + L +
Sbjct:  493 EIGKSRTIRQGEKVAILNFGVLLPYAEKAAEVLN-----ATVIDMRFVKPLDTEAVANVAKNHELLITLEDGATTGGAGGAVAEYL-LSTVHTS--RLLQIGLPDEFIMQGTQTEMYAEIGMDDAGIIAKAHTFLAQ 621          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BUCAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  260 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHAS 589
            +GK  +   G+ +A+L +GA++QN     A L+   ++ T+ D RF KPLD  ++ +L   + FL+T+EEG + GG GS V+ FI +  +L   +    I LPD +I H S
Sbjct:  458 LGKSLIKRVGEKIAILNFGALLQN-----AYLAAEKLNATLIDMRFVKPLDTNMILKLSLKYNFLVTIEEGVIAGGAGSAVNEFIMMRKIL---LPVLNIGLPDMFIAHGS 560          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_RALSO6.762e-1133.081-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_PSEA66.762e-1134.311-deoxy-D-xylulose-5-phosphate synthase OS=Pseudoa... [more]
DXS_BUCAP8.832e-1136.941-deoxy-D-xylulose-5-phosphate synthase OS=Buchner... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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