DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_MAGSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetococcus sp. (strain MC-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSLGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLG 592
            EIG+G+   +G+  A+L  G  V   L+A A+L + GI V+V DARF KPLD +L++E+  +   L+  E    GGFGS V   ++  G LD G+K R + +PD YI H +  +     GL    IA T   LLG
Sbjct:  488 EIGRGRTLRKGEHAAILAVGQPVHPALEAAAILEQQGISVSVYDARFVKPLDQRLLQEVAMHGVVLVVEENAVQGGFGSAVLESLSNQGALDRGLKIRCMGIPDRYIPHGTQKELRGEIGLDAVGIATTLKELLG 622          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 57/134 (42.54%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  197 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 589
            IGKG++   G D+ LLGYG MV   L+   +LS+ GI+ TV +ARF KPLD +L+  L Q    ++T+EEG L GGFGS V     L+ L D+   V  +   +PD  ++HA+P +  A  GLT   IA   L+
Sbjct:  496 IGKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAV-----LEALQDANILVPVKRFGVPDKLVDHATPEESFADLGLTSPQIAQQVLA 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IGKG++   G D+ +LGYG MV   L+A   L + GI+ TV +ARF KPLD +L+  L Q    ++T+EEG L GGFGS V+   +   +L   V  +   +PD  ++HA+P Q  A  GLT   IA   L +    R+
Sbjct:  496 IGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFGSAVAEAFSDHNVL---VPLKRFGVPDRLVDHATPDQSKADLGLTSPQIAEQILQVFFSNRQ 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 61/140 (43.57%), Postives = 77/140 (55.00%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATA---LSLLGR 592
            EIGKG V  +G  VALL +G  +   LK    L     D TV D RF KP+D  LVRE+  +H  L+T+EE + +GG G  VS F+A + +L S +    + LPD Y+EHA P Q LA  GL    I A     L LL R
Sbjct:  501 EIGKGVVRRQGSKVALLVFGVQMAEALKVAETL-----DATVVDMRFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEVGIEAAVRERLELLNR 632          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IGKG++   G D+ LLGYG MV   ++   +L + GI+ TV +ARF KPLD  L+  L +    ++T+EEG L GGFGS V+     + LLD    V  +   +PD  ++HA P +  A  GLT   IA   L    +T+E
Sbjct:  495 IGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVA-----EALLDHNVLVPVKRFGVPDQLVDHAKPDESFADLGLTSSQIADEVLKSFFKTQE 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATA---LSLLG 592
            EIGKG +  +G+ VALL +G  +   L+    L     D TV D RF KPLD  LVRE+  +H  L+T+EE + +GG G  VS ++A + +L      +PI+   LPD Y+EHA P Q LA  GL    I A+    L+LLG
Sbjct:  501 EIGKGVIRRQGRQVALLVFGVQLAEALQVAEKL-----DATVVDMRFVKPLDEALVREIASSHELLVTIEENAIMGGAGGAVSEYLARENIL------KPILHLGLPDAYVEHAKPAQMLAECGLDEAGIEASVRQRLALLG 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 59/137 (43.07%), Postives = 75/137 (54.74%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V   G  VALL +G  +   +K        G+D TVAD RF KPLD  LVREL  +H  L+++EE + +GG GS V  F+A +GL    V    + LPD Y+EHA P++ LA  GL    I       L R
Sbjct:  498 EIGKGVVRRRGGKVALLVFGVQLAEAMKVAE-----GLDATVADMRFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = -2
Query:  182 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 592
            EIGK ++   G DV LLGYG+MV   L+   LL + GI+ TV +ARF KPLD +L+  L +    ++T+EEG L GGFGS V+  +  + +L   V  + + +PD  ++HA+P Q     GLT   +A   ++ L +T
Sbjct:  495 EIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNNVL---VPLKRLGVPDILVDHATPEQSTVDLGLTPAQMAQNIMASLFKT 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.373e-18
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            IGK +V   G +V +L YG+MV   L+A  +L + GI  TV +ARF KPLD +L+  L Q    ++TVEEG L GGFGS V      + LLD+ ++  P++   +PD ++EHA+P + LA  GL    IA
Sbjct:  501 IGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVG-----EALLDADIR-VPLLRLGVPDVWVEHATPEESLAELGLNSVGIA 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DEHSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain BAV1) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 52/139 (37.41%), Postives = 82/139 (58.99%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IG+ ++ V G DVA+L  G  V    +A  +L++ GI  T+ + R+  PLD +LV ++ Q+H +L+TVEE  + GG GS ++  +A  GL++  +K   I +PD ++EH + +   A  GL G  IA   LSL+G   E
Sbjct:  487 IGQNEILVNGSDVAILATGKSVAFAREALEILTESGIKPTLVNNRYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVNK-IKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 624          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_MAGSM2.319e-1940.001-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_MICAN3.955e-1942.541-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_CYAP86.746e-1940.291-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PSEPF1.503e-1843.571-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CYAP71.503e-1839.721-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PSEF51.963e-1842.251-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA71.963e-1843.071-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_SYNY32.564e-1839.861-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNJA4.373e-1843.081-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_DEHSB5.711e-1837.411-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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