DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = -2
Query:  212 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIA 589
            IGK +V   G +V +L YG+MV   L+A  +L + GI  TV +ARF KPLD +L+  L +    ++TVEEG L GGFGS V+  + LD   D  V    + +PD ++EHA+P + LA  GL    IA
Sbjct:  501 IGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEAL-LDA--DLAVPLLRLGVPDVWVEHATPEESLAELGLNSAGIA 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  230 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGL 592
            EIGK  V   G  VALL +G  +   L+    L     D TV D RF KPLD  L+REL  +H  L+TVEE S +GG GS V+ F+A +G+L      RPI+   LPD Y+EHA P++ LA  GL
Sbjct:  500 EIGKAVVRRRGSKVALLVFGVQLPEALQVGDAL-----DATVVDMRFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVL------RPILHLGLPDYYVEHAKPSEMLAECGL 613          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 57/139 (41.01%), Postives = 77/139 (55.40%), Query Frame = -2
Query:  182 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRT 589
            IGKG++   G DV L+GYG MV   L+   +L + GI+ TV +ARF KPLD +L+  L Q    ++T+EEG L GGFGS V+     + LLD    V  +   +PD  ++HA P +  A  GLT   IA     L   T
Sbjct:  496 IGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVA-----EALLDHDVVVPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIRQLFFNT 629          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT---ALSLLG 592
            EIGKG V  +G+ VA+L +G  +     A AL+    +D TV D RF KPLD  LVRE   +H  L+T+EE + +GG G+ VS F+A   +L S +    + LPD Y+EHA P Q LA  GL    I A     L+L+G
Sbjct:  501 EIGKGVVRRQGQGVAILVFGVQL-----AEALVVAEKLDATVIDMRFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 60/139 (43.17%), Postives = 79/139 (56.83%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT---ALSLLG 592
            EIGKG V  +G+ VA+L +G  +     A AL+    +D TV D RF KPLD  LV E   NH  L+T+EE + +GG G+ VS F+A   +L S +    + LPD Y+EHA P Q LA  GL    I A     L+L+G
Sbjct:  500 EIGKGVVRRQGQGVAILVFGVQL-----ADALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDTYVEHAKPAQMLAECGLDAQGIEAAINERLALIG 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.742e-18
Identity = 52/139 (37.41%), Postives = 81/139 (58.27%), Query Frame = -2
Query:  176 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTRE 589
            IG+ ++ V G DVA+L  G  V     A  +L++ GI  T+ + R+  PLD +LV ++ Q+H +L+TVEE  + GG GS ++  +A  GL++  +K   I +PD ++EH + +   A  GL G  IA   LSL+G   E
Sbjct:  501 IGQNEILVNGSDVAILATGKSVAFAKDALEILTESGIKPTLVNNRYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVNK-IKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 638          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = -2
Query:  200 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIAATAL 589
            IGKG++   G DV +LGYG+MV + ++   +LS+ G+  TV +ARF KPLD +L+  L Q    ++T+EEG L GGFGS V+     + L+D+ V   P++   +PD  ++HA P +  A  GLT   +A   L
Sbjct:  496 IGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVT-----EALMDNNV-LVPVLRLGVPDKLVDHAKPDESKADLGLTPSQMAERIL 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEAE (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 59/137 (43.07%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V   G  VALL +G  +   +K    L     D TV D RF KPLD  LVREL  +H  L+T+EE + +GG GS V  F+A +GL    V    + LPD Y+EHA P++ LA  GL    I       L R
Sbjct:  498 EIGKGVVRRRGGRVALLVFGVQLAEAMKVAESL-----DATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 59/137 (43.07%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V   G  VALL +G  +   +K    L     D TV D RF KPLD  LVREL  +H  L+T+EE + +GG GS V  F+A +GL    V    + LPD Y+EHA P++ LA  GL    I       L R
Sbjct:  498 EIGKGVVRRRGGRVALLVFGVQLAEAMKVAESL-----DATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEA8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 59/137 (43.07%), Postives = 73/137 (53.28%), Query Frame = -2
Query:  185 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGR 592
            EIGKG V   G  VALL +G  +   +K    L     D TV D RF KPLD  LVREL  +H  L+T+EE + +GG GS V  F+A +GL    V    + LPD Y+EHA P++ LA  GL    I       L R
Sbjct:  498 EIGKGVVRRRGGRVALLVFGVQLAEAMKVAESL-----DATVVDMRFVKPLDEALVRELAGSHELLVTIEENAVMGGAGSAVGEFLASEGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_SYNJB7.459e-1843.311-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PSEU57.459e-1846.401-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_CYAA57.459e-1841.011-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PSESM9.742e-1843.171-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSE149.742e-1843.171-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_DEHSC9.742e-1837.411-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_TRIEI1.272e-1740.301-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_PSEAE1.272e-1743.071-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEAB1.272e-1743.071-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEA81.272e-1743.071-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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