DT214510

Overview
NameDT214510
Unique NameDT214510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DEHE1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides ethenogenes (strain 195) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 52/140 (37.14%), Postives = 81/140 (57.86%), Query Frame = -2
Query:  173 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREA 589
            IG+ +V   G ++A+   G  V    +A  +L++ GI  T+ + R+  PLD +L+ ++  NH +LITVEE  L GG GS ++  +A  GL+++ VK   I +PD ++EH + +   A  GL G  IA   LSL+  T EA
Sbjct:  501 IGENEVLASGSEIAIFATGKSVAFAKEAMEILAESGIKPTLVNNRYISPLDTELILKIAGNHKYLITVEENVLSGGLGSRINTILAEAGLVNA-VKIANIAVPDKFVEHGNQSLLRAKYGLDGKGIAQKVLSLMANTGEA 639          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEU2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 59/139 (42.45%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  188 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT---ALSLLG 592
            EIGKG V  +G+ VA+L +G  +     A AL+    +D TV D RF KPLD  LV E   NH  L+T+EE + +GG G+ VS F+A   +L S +    + LPD Y+EHA P Q L   GL    I A     L+L+G
Sbjct:  500 EIGKGVVRRQGQGVAILAFGVQL-----AEALVVAEKLDATVIDMRFVKPLDEALVSEAAANHELLVTLEENAVMGGAGAAVSEFLARANILKSVLH---LGLPDVYVEHAKPAQMLTECGLDAQGIEAAINERLALIG 630          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 57/130 (43.85%), Postives = 72/130 (55.38%), Query Frame = -2
Query:  206 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT 592
            EIGKG V  +G   A L +G  +   LK         ID TV D RF KPLD  LVRE+   H  L+TVEE + +GG G+ VS F+A + +L S +    + LPD Y+EHA P Q LA  GL    I A+
Sbjct:  501 EIGKGIVRRQGSKTAFLVFGVQLAEALKVAEK-----IDATVVDMRFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLH---LGLPDVYVEHAKPAQMLAECGLDEAGIEAS 622          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_GLOVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Gloeobacter violaceus GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 58/131 (44.27%), Postives = 77/131 (58.78%), Query Frame = -2
Query:  206 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSG--VKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAAT 589
            IGK +V   G D+ ++  G MV   L+A ALLS+ GID TV +ARF KPLD +L+  L +    ++TVEEG  +GGFGS V     L+ L+D G  V    I + D ++ HA  +Q L L GLT   IA T
Sbjct:  498 IGKAEVLRSGDDLLIVAIGTMVHPSLQAAALLSEHGIDATVVNARFAKPLDTELLLPLARRIGRVVTVEEGCRMGGFGSAV-----LEALMDGGIAVPTLRIGIDDKFVTHAGRSQLLDLLGLTPSGIAKT 623          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = -2
Query:  197 IGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALS 589
            IGK +V  +G D+ +L YG+MV   L+A  +L + GI  TV +ARF KPLD +L+  L +    ++TVEEG L GGFGS V   +    +L   V    I +PD  +EHA+P Q  A  GLT   IA   L+
Sbjct:  494 IGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQEIL---VPVTRIGIPDILVEHATPDQSKAQLGLTSAQIAERVLA 622          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +L+TVEEG  +GG GS       ++ L++SGV  RP++   LPD +I+H  P + LA  GL G  IA
Sbjct:  501 LGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAGEELDATVANMRFVKPIDAALVRELAETHDYLVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVIQLGLPDQFIDHGDPAKLLAQCGLDGAGIA 624          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_RALME (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = -2
Query:  230 IGKGKVFVEG-----KDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEG-SLGGFGSHVSHFIALDGLLDSGVKWRPIV--LPDNYIEHASPTQQLALAGL 589
            +GKG++  EG     + VA++ +G+MV   L A   L     D TVA+ RF KPLD++LV++L  NH FL+TVEEG ++GG GS V     L+ L ++G++   +V  LPD +I+H  P   L+L GL
Sbjct:  494 VGKGEIRREGHARAGQRVAIMAFGSMVHPALTAAEQL-----DATVANMRFVKPLDVELVKQLAANHDFLVTVEEGATMGGAGSAV-----LEALAEAGIELPTLVLGLPDKFIDHGDPAHLLSLCGL 611          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  212 IGKGKVF-----VEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGS-LGGFGSHVSHFIALDGLLDSGVKWRPIV---LPDNYIEHASPTQQLALAGLTGHHIA 589
            +GKG+V       EGK VA+L +G MV     A +L +   +D TVA+ RF KP+D  LVREL + H +L+TVEEG  +GG GS       ++ L++SGV  RP++   LPD +I+H  P + LA  GL G  IA
Sbjct:  489 LGKGEVRRRTSQPEGKRVAILAFGTMV-----APSLAAGEELDATVANMRFVKPVDAALVRELAETHDYLVTVEEGCVMGGAGS-----ACVEALMESGV-IRPVIQLGLPDQFIDHGDPAKLLAQCGLDGAGIA 612          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = -2
Query:  167 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLLGRTREALL 592
            EIG+G++  EG DVA++  G+ V    +A  LL   GI  TV +ARF KPLD +L+    +    ++TVEE +L GGFGS V   +A +G+ D  V+ + I +PD +IE     Q     GL G  IAAT  + L    +A L
Sbjct:  491 EIGRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMTD--VRAKRIGIPDRFIEQGPQPQLRKDLGLDGAGIAATVEAFLTAKGQAAL 631          
BLAST of DT214510 vs. ExPASy Swiss-Prot
Match: DXS_DICT6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = -2
Query:  191 EIGKGKVFVEGKDVALLGYGAMVQNCLKARALLSKLGIDVTVADARFCKPLDIKLVRELCQNHTFLITVEEGSL-GGFGSHVSHFIALDGLLDSGVKWRPIVLPDNYIEHASPTQQLALAGLTGHHIAATALSLL 592
            EIGK ++   GK+V +L  G+MV   L+A ++L   GI  T+ + RF KPLD+  + EL  +H  +ITVEE  + GG    +S  +    +L    K  PI LPD +IE  +      + GL+GH IA   +S+L
Sbjct:  482 EIGKSEILKYGKNVLILAIGSMVYPALEAESILKTEGISPTIVNVRFLKPLDVLTLEELISSHDVIITVEENVITGGLFGAISELV---NILKLNKKVLPISLPDKFIEQGNAQLLRDIYGLSGHKIAEKIISVL 613          
The following BLAST results are available for this feature:
BLAST of DT214510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
DXS_DEHE11.272e-1737.141-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_PSEU21.662e-1742.451-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEFS2.170e-1743.851-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_GLOVI2.170e-1744.271-deoxy-D-xylulose-5-phosphate synthase OS=Gloeoba... [more]
DXS_CYAP42.834e-1742.421-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_BURCM2.834e-1743.701-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_RALME3.702e-1742.191-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_BURA43.702e-1743.701-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS2_GEOMG3.702e-1739.861-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_DICT66.314e-1737.781-deoxy-D-xylulose-5-phosphate synthase OS=Dictyog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_21F06_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-21F06-K11-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214510 ID=DT214510; Name=DT214510; organism=Citrus sinensis; type=EST; length=722bp
TTAATTTACAATGACGTACCCAACATTAAGAAAAACAGTTGATCTATATT
TGGTTCTTGCCCTCTCTTATGTTTTTGTTGTTCCCTCATCCTTTCTAATA
AGTGAATTTACCAATCTGGGAAACTCAAATGCCAAAAAGAAAACTCGGGG
GTTTCTAGCACATTAAAAGGAGGGCTTCACGGGTGCGCCCGAGCAAACTT
AATGCTGTAGCAGCAATGTGATGTCCAGTGAGTCCCGCAAGAGCAAGCTG
TTGGGTTGGTGATGCATGTTCAATATAGTTGTCTGGTAAAACAATTGGTC
TCCACTTAACTCCTGAATCAAGCAGTCCGTCAAGGGCAATGAAGTGTGAA
ACATGTGAACCAAATCCTCCAAGGGAGCCTTCCTCAACTGTTATCAAAAA
TGTATGGTTTTGACAAAGCTCCCTGACCAGCTTAATATCTAGGGGCTTGC
AAAATCTTGCATCAGCCACAGTAACATCAATGCCAAGCTTTGAAAGAAGG
GCCCGAGCTTTCAGGCAGTTCTGAACCATTGCCCCATATCCAAGCAAAGC
AACATCTTTGCCCTCTACAAAAACTTTCCCTTTTCCAATCTCCTCAAATC
AAATTCAAGCAAAGTTTGAAAATGACTAATGAAGAATAATAAAAAAGCAA
AATGGAATATGCAAGTAAGTCATAAAATTGATAAAAATAACTTAATATTT
TGGACAATGTTTACCTTAACCC
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