DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.476e-26
Identity = 68/187 (36.36%), Postives = 109/187 (58.29%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWD-KNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDY---KDDISREEAVQLALKVLSKTMDS 825
            QVEYA+EA+     A+G+  K+ VVL  E++ T KL  T  +  K+ KID HV  + +G+ +D+ ILI  ARV+AQ +    ++P+ VE L + +   +Q YTQ GG+RPFGVS L AG+D ++   +LY ++PSG Y  W            +  L+++Y   +   + EE V+L ++ L + + +
Sbjct:   19 QVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT 205          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.234e-26
Identity = 77/204 (37.75%), Postives = 118/204 (57.84%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +               QS L++ Y   ++ +EA++ +L +L + M+   L +  +ELA V
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.234e-26
Identity = 77/204 (37.75%), Postives = 118/204 (57.84%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +               QS L++ Y   ++ +EA++ +L +L + M+   L +  +ELA V
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.234e-26
Identity = 77/204 (37.75%), Postives = 118/204 (57.84%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +               QS L++ Y   ++ +EA++ +L +L + M+   L +  +ELA V
Sbjct:   23 QVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.517e-26
Identity = 69/196 (35.20%), Postives = 114/196 (58.16%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA EA+    +++G+ ++DGVV+  ++   S L++   S EK+++ID HV  A AG ++DA  LI+ AR Q+Q     Y EP  VE L + + D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    W+           Q+ L+++Y + +  E  ++LAL+ L+ +++   L +  +++A +
Sbjct:   24 QVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERD-SIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIEDGEP-RLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALA-SVNEDGLDATGVDIATI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.517e-26
Identity = 69/191 (36.13%), Postives = 105/191 (54.97%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACA------VAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 825
            QVEYA EA+    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A      V+G+ +DA I+IN ARV+ Q +     +P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y DD    +   ++L +K L + + S
Sbjct:   18 QVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 207          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.517e-26
Identity = 75/222 (33.78%), Postives = 118/222 (53.15%), Query Frame = -2
Query:  166 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 825
            QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ    RPFG+S L  G+D +   +LY +DPSG Y  WK           +   +++Y D+    +   ++L +K L + + S       +ELA   +M   +    + SPE + K + +
Sbjct:   18 QVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQS---GGKNIELA---VMRRDQPLKILTSPEEIEKYVAE 232          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.410e-26
Identity = 73/229 (31.88%), Postives = 123/229 (53.71%), Query Frame = -2
Query:  139 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 825
            QVEYA EA+    +A+G+  KD +V+  EKK +   LQ   +  K++ IDDHV  A AG+ +DA +L++ AR++ Q Y    ++P+ V  + + + +TKQ +TQ  G RPFG+S L  G+D +   +L+ ++PSG Y  +            +  L++ Y ++ + +EA  L L V+          S  +E+A V    + +++ +V S E +  LL      + AAE
Sbjct:   19 QVEYAQEAVKKGSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKL-VVKSLAQVVPPGSQNIEIA-VMKKVNDELQQRVLSTEEIEALLKVVETERVAAE 244          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.738e-25
Identity = 67/197 (34.01%), Postives = 107/197 (54.31%), Query Frame = -2
Query:  244 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQ---DYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 825
            QVEYA++A+ N  ++IGI   DGVV   EK +TSKLL    +  K+  +D H+ C  +G++ D   L+N  R +A  +   Y+ P+P+      L    Q +T +  +RPFGVS +F G DKN G  LYM +PSG+Y G+K           ++ L++    + + +S  EAV+ A K++    +       +LE++
Sbjct:   23 QVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEIS 217          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.576e-25
Identity = 72/204 (35.29%), Postives = 109/204 (53.43%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  +  G+
Sbjct:   23 QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGELTKGR 224          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA7_YEAST2.476e-2636.36Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA5_MOUSE3.234e-2637.75Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN3.234e-2637.75Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN3.234e-2637.75Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSMA2_HALMA5.517e-2635.20Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA7_RAT5.517e-2636.13Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA7_CHICK5.517e-2633.78Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_CAEEL9.410e-2631.88Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA3_YEAST2.738e-2534.01Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_MOUSE3.576e-2535.29Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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