DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.670e-25
Identity = 72/204 (35.29%), Postives = 109/204 (53.43%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  +  G+
Sbjct:   23 QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGELTKGR 224          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.670e-25
Identity = 72/204 (35.29%), Postives = 110/204 (53.92%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  + +G+
Sbjct:   23 QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVA-KIIYIVHDEVKDKAFELELSWVGELTNGR 224          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.670e-25
Identity = 72/204 (35.29%), Postives = 110/204 (53.92%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V  + +G+
Sbjct:   23 QVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWVGEITNGR 224          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.966e-25
Identity = 70/197 (35.53%), Postives = 106/197 (53.81%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTAR-VQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            Q+EYA+ A+    +A+GI + +G+VL  EKK +S L   S S  K+  I  ++    +G+  D  +L++ AR V    Y   Y E  P   LVQ +    Q  TQ GG+RP+GVS L AGWD+  G  LY  DPSG+Y  WK           ++ L++ Y + +  E+AV +AL  L +T++   +  D +E+  V
Sbjct:   20 QIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPS-SLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWDEG-GPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEG-EMNGDTIEIGIV 213          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.040e-24
Identity = 75/204 (36.76%), Postives = 115/204 (56.37%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+E      +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +               QS L++ Y    + +EA++ +L +L + M+   L +  +ELA V
Sbjct:   23 QVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.040e-24
Identity = 64/189 (33.86%), Postives = 109/189 (57.67%), Query Frame = -2
Query:  265 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK--DDISREEAVQLALKVLSKTMDSTSLT 825
            Q+EYAMEA+   G+A+ + SK   VLV  K+ +S+L    +  +K++ +DDHV  A++G+ +DA +L N  R +   Y Y Y+  M VE+LV  + D  Q +TQ  G RP+GV  L AG+D+  G  +Y + PSGN+  +K           ++ L++ ++  ++ + E+ +   L+ L +T+ +T  T
Sbjct:   21 QIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSEL---GSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQ-LGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDT 205          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.775e-24
Identity = 68/203 (33.50%), Postives = 115/203 (56.65%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA+EA+    ++IGI + +GV+L  EK+ TSKL+  + + EK+ K+D H+    AG+++D+  L+  A+++AQ + + Y   + VE + QS+ +      QFG         RPFGV+ LFAG D+  G +L+  DPSG +   K           +  LK+ Y D ++ +E +++AL +L + M+   L S  +E+  +
Sbjct:   23 QVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLM-VNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA---LQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEE-KLNSANVEVVVI 219          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.318e-24
Identity = 71/200 (35.50%), Postives = 109/200 (54.50%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 825
            QVEYA+EAI    +AIGI + +GVVL  EK++TS L+  ST  EK+ ++D H+ CA +G+M+DA  LI  ARV+ Q + + Y E M +E   Q++      +   G         RPFGV+ LFAG +     QL+  DPSG +               Q  L+  ++ D++ +EA+ ++L  L + M+   L S  +E+
Sbjct:   23 QVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPST-VEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQP-QLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEE-KLNSTNVEV 219          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.164e-24
Identity = 66/193 (34.20%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 825
            QV+YA +A+ N+G+ + I +KDGVVL  EK V SK+L  S S  +++ ID HV  A+AG ++DA  LI  AR +A+ Y   Y +P+P++ L Q +      +T +G +RPFG S    G D+ YG QL++ +PSG+  G+            ++ L++    +++  EA++   +++    D       +LEL
Sbjct:   23 QVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKML-CSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQ-YGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELEL 213          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 6.744e-24
Identity = 66/196 (33.67%), Postives = 109/196 (55.61%), Query Frame = -2
Query:  244 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELA 825
            QVEYAMEA+    +AIG+ S+  VVL    K  S+L   S+   K++K+DDH+  A+AG+ +D  +L    R ++  +++ Y+ P+PV +LV  L D  Q  TQ    RP+GV  L  G D++ G  LY + PSGNY  ++           ++ L++ ++   D SRE+ ++ A+  + +T+   +L S    +A
Sbjct:   21 QVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL---SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVA 212          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA3_RAT4.670e-2535.29Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_HUMAN4.670e-2535.29Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN4.670e-2535.29Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA2_NEUCR7.966e-2535.53Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA5_RAT1.040e-2436.76Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA1_DICDI1.040e-2433.86Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA5_CAEEL1.775e-2433.50Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA5_DROME2.318e-2435.50Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA3_DICDI5.164e-2434.20Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA1A_ARATH6.744e-2433.67Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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