DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 60/182 (32.97%), Postives = 97/182 (53.30%), Query Frame = -2
Query:  283 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 825
            QVEYA +AI     + + + S D  V+  +KKVT K +   T T  +++I   + CA+ G ++D+   +  AR +A  + Y Y   MPV+ L + + D  Q YTQ   +RP G S +   +D   G  +Y +DP+G + G+K            S L++ YK ++S E+A+QLA+  LS  +
Sbjct:   24 QVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVL 204          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.563e-23
Identity = 75/219 (34.25%), Postives = 111/219 (50.68%), Query Frame = -2
Query:  172 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV-FLMPSGKVKYQVCSPEALSKLL 825
            QVEYA EA+   GS +G+ +K+ VVL  EK+    L Q   ++ K+ KID H+A   AG+ +DA +L++ A+V+AQ +   +  P  VE + + L   KQ YTQ    RPFGVS L  G+D++   +L+ +DPSG Y  W               L+++        +A      V+     +TSL    +ELA + +  P   VK     PE L  LL
Sbjct:   18 QVEYAQEAV-RKGSTVGLRTKECVVLGVEKRAIDSL-QIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASIELAVLRYWQPIEMVK-----PETLEYLL 229          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.563e-23
Identity = 67/205 (32.68%), Postives = 112/205 (54.63%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYA EA+    +A+G+   + VVL  EKK  ++L Q      K+  +D+HV  A AG+ +DA I+IN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K           +   ++ Y+++    E  AV+LA++ L +   S     + LE+A   +M +GK
Sbjct:   20 QVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQL-QEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQS---GQNNLEVA---IMENGK 217          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.563e-23
Identity = 63/190 (33.16%), Postives = 107/190 (56.32%), Query Frame = -2
Query:  262 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK--DDISREEAVQLALKVLSKTMDSTSLTS 825
            QVEYAMEA+    +AIG+ S+  VVL    K  S+L   S+   K++K+DDH+  A+AG+ +D  +L    R ++  +++ Y+ P+PV +LV  L D  Q  TQ    RP+GV  L  G D++ G  LY + PSGNY  ++           ++ L++ ++   + S+E+ ++ A+  + +T+   +L S
Sbjct:   21 QVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL---SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKS 206          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 65/184 (35.33%), Postives = 97/184 (52.72%), Query Frame = -2
Query:  283 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 825
            QVEYA +A+  AG ++IG+  KD + +V  KKV  KLL  +TS   ++ I  ++     G+ +DA  L+  AR +A  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D  YG QLY  DP+G+Y G K            + L++  K+D   + EE VQ A+  L   +
Sbjct:   24 QVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLD-NTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVL 206          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 64/195 (32.82%), Postives = 106/195 (54.36%), Query Frame = -2
Query:  244 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 825
            Q++YA+ A+    +++GI + +GVV+  EKK +S L  + T + K+  +   +    +G+  D  +L++ +R  A   Y   Y E  P + LV  +    Q  TQ GG+RPFGVS L AG D+  GF LY  DPSG+Y  WK           ++ L++ + D++  E+A+ +AL  L ++++      D +ELA
Sbjct:   20 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS-KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-EFNGDTIELA 212          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 66/199 (33.17%), Postives = 106/199 (53.27%), Query Frame = -2
Query:  238 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA +AI   G +++ +  KD  V+V +KKV  KLL +ST T  ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   24 QVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 66/199 (33.17%), Postives = 106/199 (53.27%), Query Frame = -2
Query:  238 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA +AI   G +++ +  KD  V+V +KKV  KLL +ST T  ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   24 QVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 66/199 (33.17%), Postives = 106/199 (53.27%), Query Frame = -2
Query:  238 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA +AI   G +++ +  KD  V+V +KKV  KLL +ST T  ++KI +++ C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   24 QVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.738e-23
Identity = 66/199 (33.17%), Postives = 105/199 (52.76%), Query Frame = -2
Query:  238 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA +AI   G +++ +  KD  V+V +KKV  KLL +ST T  ++KI + + C + G+ +D+   +  AR +A  + Y Y   +PV+ L + + D  Q YTQ   +RP G   +  G D+  G Q+Y  DP+G Y G+K            S L++  K   D + E+ V+ A+  LS T+ S      ++E+  V
Sbjct:   24 QVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLS-TVLSIDFKPSEIEVGVV 220          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA6_DROME1.962e-2332.97Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA73_DROVI2.563e-2334.25Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA71_DROME2.563e-2332.68Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA1B_ARATH2.563e-2333.16Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA6_SOYBN3.347e-2335.33Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA2_YEAST3.347e-2332.82Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA6_RAT5.709e-2333.17Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN5.709e-2333.17Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN5.709e-2333.17Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_MOUSE9.738e-2333.17Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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