DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 63/184 (34.24%), Postives = 99/184 (53.80%), Query Frame = -2
Query:  283 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 825
            QVEYA +A+ +AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + + +   MPV+ L + + D  Q YTQ   +RP GV  +  G+D+    QL+  DP+G++ G K            + L++  KDD   S EE VQ+A+  L   +
Sbjct:   24 QVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVL 206          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 64/222 (28.83%), Postives = 117/222 (52.70%), Query Frame = -2
Query:  160 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHG 825
            Q++YA +A+  +G+ IGI  KD VVL  EK +TSKL +      +++ I+ ++  AVAG+++D N + + AR +A  Y   +++ +P++ L   +      YT +  +RPFG+S + A WD+  G QLY  +PSG+  G+            ++ +++  K D+  +E V+ A +++ K  D       + E+  V  +  G     + +P  L++   K G
Sbjct:   23 QIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGG-RIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEK-LKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGG---LHLINPSELTEKARKAG 239          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 70/221 (31.67%), Postives = 112/221 (50.68%), Query Frame = -2
Query:  172 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKD--DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK-VKYQVCSPEALSKLL 825
            QVEYA EA+ N  +A+G  +KD VVL   K+  S + Q S+  EK++K+DDHV  A+AG+++D  +L    R +   Y Y +    P+  + + + +  Q + QF G RPFGV  L AG+D   G  LY + PSG+   +K           ++ L++ ++   D   +E +  ALK L+      +    +L +    +   GK   + V + EA  K L
Sbjct:   21 QVEYANEAVNNGSAAVGAKNKDFVVLTALKR--SPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDST-GPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGA----ELNIKNTTIAIVGKGTPFMVLTEEAARKYL 234          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 68/234 (29.06%), Postives = 120/234 (51.28%), Query Frame = -2
Query:  139 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK--DDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVK-YQVCSPEALSKLL--VKHGVTQPAAE 825
            QVEYAMEA+    + +G+ S+   VL    K  S+L   S+   K++++ DH   A+AG+ +D  +L    R +   + + Y  P+PV +L   L D  Q  TQ    RP+GV  L AG D++ G  LY + PSGNY  ++           ++ L++ ++  +D + E+ ++ AL  + +T+    LTS    +A V     G V+ +++   + + +++  ++     PAAE
Sbjct:   21 QVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAAEEAPAAE 250          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.833e-22
Identity = 63/196 (32.14%), Postives = 108/196 (55.10%), Query Frame = -2
Query:  244 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDSTSLTSDKLELA 825
            QVEYA EA+    +A+G+   + VVL  EK   S++ Q   +  K+  +D HVA A AG+ +DA ILIN  +V+ Q +   ++  + +E + + L   KQ YTQ  G RPFG+S L  G D +   +L+ ++PSG +  +K           +   ++ Y D    ++ +A++LA++ L   ++ T ++  +LE+A
Sbjct:   20 QVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEM-QEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRAL---LEVTQMSQMRLEVA 211          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.833e-22
Identity = 65/192 (33.85%), Postives = 99/192 (51.56%), Query Frame = -2
Query:  259 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDSTSLTSD 825
            QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D+  G QL+  DP+G++ G K            + L++  K+D   S EE VQ A+  L   +      S+
Sbjct:   24 QVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLD-QTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASE 214          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.312e-22
Identity = 66/195 (33.85%), Postives = 101/195 (51.79%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAG-WDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDY-KDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 825
            QVE+A++ +  AG+ IG +  DGVVL+G  K       T+   EK+Y++ D + C + G+  DA  L   AR++AQ     +    P+  L + +   KQ +TQ+ G RPFGVSFL+AG  D  Y   L  +DPSG    WK              LK D+ +D++  + A    L++L K  +     +D+LE+
Sbjct:   19 QVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEP-----TNGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDGKYA--LMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPEDEMDMKTATVEILRLLGKARELGPKEADRLEI 206          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.837e-21
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = -2
Query:  283 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 825
            QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL  S+ T  ++ I  ++     GI +DA  L+  AR QA  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D+  G  LY  DP+G++ G K            + L++  K++   + +E VQ A+  L   +
Sbjct:   24 QVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH-LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVL 206          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.399e-21
Identity = 62/210 (29.52%), Postives = 114/210 (54.29%), Query Frame = -2
Query:  202 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS-TSLTSDKLELAEV-FLMPSGKVKYQV 825
            QVEYA EA+    + +G+ + + +V+  EK+    L Q      K+  +DDHV    +G+ +DA IL++ A+++AQ +   +++P  VE + + +   KQ YTQ  G RPFG+S L  G+D++    L+ +DPSG +  W+           +  +++ + D+I        A+K + +T+ S +SL   ++E+A + +  P   + +QV
Sbjct:   20 QVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDL-QEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEK-HADEILTIADEAAAIKHIVRTLVSVSSLNHTQMEVAVLKYRQPLRMIDHQV 227          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.133e-21
Identity = 63/196 (32.14%), Postives = 110/196 (56.12%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA +A+ N+G+A+G+  KDGVVL  EK + SK+L  +T+  +++ +D H   A++G+++D   L++  R +A  Y   Y   +  + L + L +  Q Y+ +G +RPFG S +    DKN G QLYM +PSG   G+            ++ +++    +++  EA++ A K++    D     + +LEL+ V
Sbjct:   21 QVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTN-RRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKN-GPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWV 214          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA6_ORYSJ1.661e-2234.24Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA3_DROME2.169e-2228.83Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA1_TRYCR2.169e-2231.67Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_ORYSJ2.169e-2229.06Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA72_DROME4.833e-2232.14Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA6_TOBAC4.833e-2233.85Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA4_ENCCU6.312e-2233.85Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA6A_ARATH1.837e-2134.24Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA73_DROME2.399e-2129.52Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA3_ACACA3.133e-2132.14Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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