DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.115e-21
Identity = 68/205 (33.17%), Postives = 110/205 (53.66%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYK-DDISREE-AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYA EA+    +A+G+   + VVL  EKK  +KL +  T   +   + DHV  A AG+ +DA ILIN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K           +   ++ Y+ +++S E  AV+LA++ L +   S           EV +M +GK
Sbjct:   20 QVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTV--RKICVLDHVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQSGQ------HNLEVAIMENGK 215          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 9.115e-21
Identity = 61/203 (30.05%), Postives = 109/203 (53.69%), Query Frame = -2
Query:  217 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGK 825
            QVEYA +A+ NAG+ I I  K+GVV+V +K ++SKL  T  +  +M+ ++D+V  AVAG   D   L N A  +A ++   Y+EPMP++ +  S+ +    +T  G  RPFG    F  W+K  G +L++ +PSG    +K           ++ +++   +++   + V+ A +++    D     + ++E+  V    +GK
Sbjct:   23 QVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLY-TDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LGISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQTNGK 223          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 61/195 (31.28%), Postives = 103/195 (52.82%), Query Frame = -2
Query:  244 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 825
            Q+EYA +A+ N+G+A+GI  KDG+VL  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A  Y   Y E +PV++L   +       T +  LRPFG   +  G+D++ G QLYM +PSG +Y  +              I K    +   RE  +++A K++ K  D     + +LE++
Sbjct:   23 QIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGIIEVA-KIIYKVHDEAKDKAFELEMS 214          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.932e-19
Identity = 61/224 (27.23%), Postives = 111/224 (49.55%), Query Frame = -2
Query:  166 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLS-KTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 825
            Q+EYA +AI   G +++GI  KD VV+  +KK+  KL+   + T  +YK+ D++ C   GI+ D+    + A  +   + + +   +P   L + + D  Q  TQ    RP GV+ +  G D   G QL+  DP+G + G+K            + L++ +K +  +S++E +Q++L V++  T+ S      K    E+ +      K+ + + E +   L K
Sbjct:   23 QIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTS-LYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVLGADLKSSDLEIGICTMDNRKFVIMTDEDIDSQLTK 245          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.932e-19
Identity = 52/135 (38.52%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  421 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 825
            QVEYA +A+ N+G+ +GI  KDG+VL  EK VTSK++    S  +++ +  H   AVAG+ +D   +++ A+ +A  Y   Y EP+ V++L   +       T +  LRPFG   +  G+D++ G QLYM +PSG
Sbjct:   23 QVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEG-SNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSG 155          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 58/184 (31.52%), Postives = 95/184 (51.63%), Query Frame = -2
Query:  283 QVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTM 825
            QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL  S S   ++ +  ++     G+ +D+  L+  AR +A  + + Y   MP + L + + D  Q YTQ   +RP GV  +  G D+  G  LY  DP+G++ G K            + L++  K++   + +E VQ A+  L   +
Sbjct:   24 QVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQS-SVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVL 206          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 64/201 (31.84%), Postives = 106/201 (52.74%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQ-----SLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            Q+EYAM+A+    + IG+ +K+ V+L  EKK+ S L Q   S  K YKI DH+    +GI  D   ++  +R     +T+ Y E + VE+L++     SL   ++   +    RPFGVS + AG+D     +LY  DPSG+Y  +K           + IL+ +Y++    +++++  L  LSK M    ++ D +E+  V
Sbjct:   19 QIEYAMKAMNLGTTTIGVRTKEFVILCSEKKILSTL-QNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTEP--RLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVM-KDKISKDNVEVVVV 215          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 61/202 (30.20%), Postives = 103/202 (50.99%), Query Frame = -2
Query:  220 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSG 825
            Q EYA +A+ NA + IGI  +DGV+L  EK VTSKLL+   +  ++  +D H+  A  G + D   ++  AR +A  +   Y  P+P   +   L +  Q +T +  +RPFGV    A +D   G  LYM +P+G Y G+            ++ L++     +  ++AV+ A ++L  T D  +    ++E+  V +  +G
Sbjct:   22 QAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNN-RIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNG 221          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 73/232 (31.47%), Postives = 116/232 (50.00%), Query Frame = -2
Query:  142 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQ--DYKDDISREEAVQLALKVLSKTMD-STSLTSDKLELAEVFLMPSGK-VKYQVCSPEALSKLLVKHGVTQPAA 825
            QVEYA+EAI    + +G++SK   VLV  K+   +L   S+  +K+ +IDDH+  A+AG+  DA +L N  + +A      +  P+PV +L+  + +  Q  TQ  G RP+GV FL  G+D++ G  L    PSG    +            ++ +++  D   D SREE +  AL+ L  T+     LT + + ++ +     GK  KY +       + L K G   PAA
Sbjct:   21 QVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVI-----GKDEKYTLYDQNDTKEWLDKLGDKGPAA 243          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.114e-18
Identity = 57/195 (29.23%), Postives = 105/195 (53.85%), Query Frame = -2
Query:  244 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 825
            Q+EYA +A+ N+G+ +GI  KDG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A+ Y   Y + +PV++L + +       T +  LRPFG   +  G+D++ G QLYM +PSG +Y  +              I K +  +   +E  +++A K++ K  D     + +LE++
Sbjct:   23 QIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVA-KIIYKLHDEAKDKAFELEMS 214          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA71_DROVI9.115e-2133.17Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA3_CAEEL9.115e-2130.05Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA3_SPIOL2.245e-1931.28Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA6_DICDI2.932e-1927.23Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA3_ORYSJ2.932e-1938.52Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA6B_ARATH3.829e-1931.52Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA5_ENCCU3.829e-1931.84Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA3_SCHPO3.829e-1930.20Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA1_SCHPO3.829e-1931.47Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA3_ARATH1.114e-1829.23Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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