DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.918e-35
Identity = 86/222 (38.74%), Postives = 134/222 (60.36%), Query Frame = -2
Query:  166 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV--KYQVCSPEALSKLLVK 825
            QVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +D++  E ++LAL  LSKT +   L  + +++A   +  SGK+  K  V   E + K + K
Sbjct:   25 QVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTE--ELKPENIDMA--IVKDSGKLVEKISVDEIEKIVKAVYK 240          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.812e-35
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++ E+ + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.491e-35
Identity = 81/212 (38.21%), Postives = 130/212 (61.32%), Query Frame = -2
Query:  190 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPE 825
            QVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E ++LAL  LSKT +   L  + +++A   +  SGK+  ++   E
Sbjct:   25 QVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTE--ELKPENIDMA--IIKDSGKLVEKISVDE 230          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.448e-34
Identity = 85/222 (38.29%), Postives = 134/222 (60.36%), Query Frame = -2
Query:  166 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV--KYQVCSPEALSKLLVK 825
            QVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E ++LAL  LSKT +   L  + +++A   +  SGK+  K  V   E + K + K
Sbjct:   25 QVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTE--ELKPENIDMA--IVKDSGKLVEKISVDEIEKIVKAVYK 240          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.471e-34
Identity = 80/194 (41.24%), Postives = 120/194 (61.86%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 825
            QV+YA EA+    +AIGI SK  VV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +L+M++PSG Y  ++              L+++YK+D++ EE + LALK LS T+  +  LT + +E+
Sbjct:   25 QVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEI 216          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_METM52.918e-3538.74Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULIY3.812e-3541.75Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN3.812e-3541.75Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM3.812e-3541.75Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL3.812e-3541.75Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK3.812e-3541.75Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA3.812e-3541.75Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_METMP8.491e-3538.21Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM71.448e-3438.29Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULSO2.471e-3441.24Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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