DT214504

Overview
NameDT214504
Unique NameDT214504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-4cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:190..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.715e-31
Identity = 70/183 (38.25%), Postives = 110/183 (60.11%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 825
            QVEYAMEA+     A+G+  KD +VL  EKK T+KL Q + S  K+ K+DDH+    AG+ +D+ +LI+ A ++ Q Y    ++   VE + + +   +Q YTQ GG+RPFG+S L  G+D +    LY +DPSG+Y  WK              L+++Y  D+S EE+++LA++ L + ++S
Sbjct:   21 QVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKL-QDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLAVRALLEIVES 201          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.269e-30
Identity = 72/177 (40.68%), Postives = 107/177 (60.45%), Query Frame = -2
Query:  295 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVL 825
            QVEYA EA+    +A+GI   DG+VL+ +K+V SKLL+ S S EK++KID+H+  A +G++ DA  L++ ARV++Q    +Y E + VE L + LCD  Q YTQFGG RP+G + L AG      F+L+ +DPSG    +K             + +++Y  + S  +A+ L LK L
Sbjct:   24 QVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPS-SIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQ-FRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLKAL 198          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.269e-30
Identity = 71/184 (38.59%), Postives = 111/184 (60.33%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 825
            QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK+  + +E V+LA++ L + ++S
Sbjct:   19 QVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKL-QDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-AGQETVKLAIRALLEVVES 200          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.164e-30
Identity = 73/196 (37.24%), Postives = 117/196 (59.69%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA EA+    ++IGI   +G+VL  +K+ TS L++ +TS EK++KID+H+  A +G+++DA  L+  ARV+AQ     Y EP+ V+ L + LCD  Q YTQ GG+RPFG + +  G       +L+ +DPSG    +K             I +  YKDD++  EA+ LAL  +++  +  + T++ +E+A +
Sbjct:   24 QVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVE-ATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGI-CKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHET-TANNVEIAVI 216          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30
Identity = 69/177 (38.98%), Postives = 110/177 (62.15%), Query Frame = -2
Query:  295 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVL 825
            QVEYA EA+    +A+GI + DGVVL+ +K+V+SKLL++S S EK++KID+H+  A +G++ DA  L++ AR++ Q    +Y E + VE L + LCD  Q  TQ+GG+RP+G + L AG       +L+ +DPSG    +K             + +++Y  D++ ++A+ L LK L
Sbjct:   24 QVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESS-SIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGES-RLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKAL 198          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30
Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 825
            QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK D S +E ++LA++ L + ++S
Sbjct:   19 QVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRALLEVVES 200          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30
Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 825
            QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK D S +E ++LA++ L + ++S
Sbjct:   19 QVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRALLEVVES 200          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.297e-30
Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = -2
Query:  277 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDS 825
            QVEYA EA+    +A+GI  KD VVL  EKK  +KL Q   +  K+  +D+HV  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+   S  +A++LA+K L + + S
Sbjct:   20 QVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKL-QEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQS 203          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.225e-30
Identity = 80/196 (40.82%), Postives = 115/196 (58.67%), Query Frame = -2
Query:  238 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 825
            QVEYA EA+    ++IGI ++DGVVLV +K++ S L++  TS EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L +++ D  Q YTQ GG RPFGV+ +  G +     +LY +DPSG    W+           Q  L++ Y + +  E  + LAL+ L+   D  SLT + + LA V
Sbjct:   25 QVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMER-TSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIEDGEP-RLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDD-SLTPEGIGLATV 217          
BLAST of DT214504 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.225e-30
Identity = 70/193 (36.27%), Postives = 109/193 (56.48%), Query Frame = -2
Query:  247 QVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 825
            Q+EYA+ A+     ++GI++ +GVV+  E K  S L +   S  ++  I +H+    +G+  D  +L+  AR  AQ Y   Y+EP+PV QLVQ +    Q YTQ GG+RPFGVS L  GWD +  + LY SDPSG Y  WK           ++ L++ Y +D+  ++AV  A+  L +  +   +T+D +E+
Sbjct:   21 QLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQH-SVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPY-LYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-KMTADNIEI 210          
The following BLAST results are available for this feature:
BLAST of DT214504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA7_DICDI9.715e-3138.25Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSMA_METPE1.269e-3040.68Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSA7A_ARATH1.269e-3038.59Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSMA_METS32.164e-3037.24Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_METB63.692e-3038.98Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA7A_ORYSJ3.692e-3039.67Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI3.692e-3039.67Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7_CARAU6.297e-3039.46Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_NATPD8.225e-3040.82Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSA2_DROME8.225e-3036.27Proteasome subunit alpha type-2 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F08_b2 Parent Washington Navel Orange Callus cDNA Library UCRCS08-4 Citrus sinensis cDNA clone UCRCS08-13F08-K15-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214504 ID=DT214504; Name=DT214504; organism=Citrus sinensis; type=EST; length=826bp
AATACAAGCTTCTGATCTCACATCAAACACATCGATCTGCAGTTCTTTGG
GCAAACTCACTGGAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTTA
GTTATAATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGG
TTGGGTTACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGC
AAACTTGGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAAT
TCAAGCTTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCAC
CTTCAGTGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAAT
CTTGTTTGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCA
GCTTTCCAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAA
GCCATAATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGC
GGAGACCGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGA
ACAAGCTGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTG
GGCTTGGACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTC
CAGCTACGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTG
GAAGTTGAGGTTTGCAGGAGCTTCGAAGTAACCTTCTTTTCACCAACCAA
GACAACCCCATCTTTCGATAATATTCCAATTGCACTACCAGCATTTCCAA
TGGCCTCCATTGCATACTCAACTTGA
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