DT214494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.359e-14 Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = -1 Query: 395 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 865 V A+V+++ T RS+GYG+V F + + +A+ EM G RP+ +T + A N + + T+F+G L N + + + F+++GE+ SV+IP KG G+VQF+N E+A++AL L G I + VRL + Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK--------------PAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.085e-13 Identity = 46/174 (26.44%), Postives = 79/174 (45.40%), Query Frame = -1 Query: 368 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR-NPANKQF 868 +V+ +V++D TGRS+G+GFV +E A + NG RP+R+ A P + S+G+ G G S ++VG L V D L FS+ G++ ++ KG GFV + + + + A+ L+G + + +R+S P +Q+ Sbjct: 116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.085e-13 Identity = 51/168 (30.36%), Postives = 78/168 (46.43%), Query Frame = -1 Query: 407 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 895 HETF S + V + KV D N G S+G+GFV F ++++ A+ +NG+ + + + P+K E ++ T I+V +D TDE+ Q FSQYGEI S + KG GFV F + A +A+ +LNG Q++ Sbjct: 155 HETF-STFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL-------------------EEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQAL 301
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13 Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = -1 Query: 431 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHKLNG 895 H+TFA+ + ++ + KV D + G SKGYGFV + D SQA+ +NG+ + + + +G P+K Q E ++ T ++V ++ VTDE+ R+ F+++GE+ S + +G GFV F E A +A+ +LNG Sbjct: 165 HDTFAA-FGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR-------------------QSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13 Identity = 49/157 (31.21%), Postives = 78/157 (49.68%), Query Frame = -1 Query: 422 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVI 880 S + + + KV+ D +TGRS+G+GFV +G+ E +A++EMNG + R + +G A R QG ++V LD + D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG ++ Sbjct: 212 SAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG---------VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13 Identity = 47/176 (26.70%), Postives = 84/176 (47.73%), Query Frame = -1 Query: 362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 865 +++ K+V D TG+S GYGFV + D N+ +A+ +NG+ ++ +++ A P S + ++V GL ++ +++ Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + + NP+ K +A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13 Identity = 47/176 (26.70%), Postives = 84/176 (47.73%), Query Frame = -1 Query: 362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 865 +++ K+V D TG+S GYGFV + D N+ +A+ +NG+ ++ +++ A P S + ++V GL ++ +++ Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + + NP+ K +A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13 Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = -1 Query: 362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 892 E F S + S+ ++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 53 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13 Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = -1 Query: 362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 892 E F S + S+ ++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 65 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13 Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = -1 Query: 362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 892 E F S + S+ ++ K+V D TG+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + NP+ K +A Sbjct: 60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220 The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bpback to top |