DT214494

Overview
NameDT214494
Unique NameDT214494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6523 contig Csv1_Contig6523:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.359e-14
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = -1
Query:  395 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSW 865
            V  A+V+++  T RS+GYG+V F + +   +A+ EM G     RP+    +T +               A N    +         + T+F+G L  N   + + + F+++GE+ SV+IP        KG G+VQF+N E+A++AL  L G  I  + VRL +
Sbjct:  194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK--------------PAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.085e-13
Identity = 46/174 (26.44%), Postives = 79/174 (45.40%), Query Frame = -1
Query:  368 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR-NPANKQF 868
            +V+  +V++D  TGRS+G+GFV     +E   A  + NG     RP+R+ A  P               + S+G+   G    G  S   ++VG L   V D  L   FS+ G++   ++         KG GFV + + +  + A+  L+G  +  + +R+S     P  +Q+
Sbjct:  116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.085e-13
Identity = 51/168 (30.36%), Postives = 78/168 (46.43%), Query Frame = -1
Query:  407 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANRENAEEALHKLNGTVIGKQSV 895
            HETF S +  V + KV  D N G S+G+GFV F ++++   A+  +NG+  +   + +    P+K                          E  ++ T I+V  +D   TDE+  Q FSQYGEI S  +        KG GFV F +   A +A+ +LNG     Q++
Sbjct:  155 HETF-STFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL-------------------EEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQAL 301          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = -1
Query:  431 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANRENAEEALHKLNG 895
            H+TFA+ + ++ + KV  D + G SKGYGFV +  D   SQA+  +NG+  + + + +G   P+K                     Q    E  ++ T ++V  ++  VTDE+ R+ F+++GE+ S  +        +G GFV F   E A +A+ +LNG
Sbjct:  165 HDTFAA-FGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR-------------------QSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 49/157 (31.21%), Postives = 78/157 (49.68%), Query Frame = -1
Query:  422 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVI 880
            S + +  + KV+ D +TGRS+G+GFV +G+  E  +A++EMNG   + R + +G A  R                      QG           ++V  LD  + D+ LR+ FS YG I S K+       KG GFV F++ E A +A+ ++NG ++
Sbjct:  212 SAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQG---------VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13
Identity = 47/176 (26.70%), Postives = 84/176 (47.73%), Query Frame = -1
Query:  362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 865
            +++ K+V D  TG+S GYGFV + D N+  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   ++ +++ Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG   +   + + + +  NP+ K  +A
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13
Identity = 47/176 (26.70%), Postives = 84/176 (47.73%), Query Frame = -1
Query:  362 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNG--TVIGKQSVRLSWGRNPANKQFRA 865
            +++ K+V D  TG+S GYGFV + D N+  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   ++ +++ Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG   +   + + + +  NP+ K  +A
Sbjct:   65 IESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 892
            E F S + S+   ++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   53 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 892
            E F S + S+   ++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   65 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225          
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.067e-13
Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = -1
Query:  362 ETFASRYPSV---KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANKQFRA 892
            E F S + S+   ++ K+V D  TG+S GYGFV + D  +  +A+  +NG+   ++ +++  A P                           S     +  ++V GL   +T ++L Q FSQYG I + +I       V +G GF++F  R  AEEA+  LNG       + + + +  NP+ K  +A
Sbjct:   60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220          
The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
NSR1_YEAST9.359e-1430.06Nuclear localization sequence-binding protein OS=S... [more]
ROC1_ARATH2.085e-1326.44Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP_KLULA2.085e-1330.36Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR2.723e-1330.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR2.723e-1331.21Embryonic polyadenylate-binding protein OS=Xenopus... [more]
ELAV3_MOUSE3.557e-1326.70ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV3_HUMAN3.557e-1326.70ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV4_RAT6.067e-1327.66ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE6.067e-1327.66ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN6.067e-1327.66ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_18F08_b2 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-2 Citrus sinensis cDNA clone UCRCS07-18F08-L16-1-5.d-polyt, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bp
TTAGTTCTAGACAATAATAAATCCAATCCCTAGAAACTACCTCAGGTCGT
CATAATTCAATTCCGCTCCACAATGGACGGCATTTTATAAGAATTACTAC
AGAACCAAGAGACTACCGAAGATCAGGCACATTTGCCCTTTCTAGCGTGA
TAACGTTTAAATTTCTAGAGCTATACGTATTCTCTCCCGTGCAGTTACCT
CAGCTTACTTGTTGTTGGTGGCTGCCATACACAGGGTAAGCCCCATAGGC
CGCAGCTGCTGCAGCGTACATGCTTGGGTCATTTGGTGGCGGAATAGCAT
ACCCATAACCATCATAAACTTGCCCTCCATAGTATGCCCCACTCCATTGA
TTGCCATAATCTGCCCTAAACTGCTTATTTGCTGGGTTGCGCCCCCAAGA
AAGACGCACACTTTGCTTGCCAATTACTGTCCCATTCAACTTATGCAGTG
CTTCCTCAGCATTCTCTCTGTTGGCAAATTGTACGAATCCGCATCCTTTC
CCGACTGGTATTTTAACCGAGGCTATTTCGCCATACTGAGAGAAAGGTTG
TCGTAGATCTTCATCTGTGACATTAGGGTCAAGGCCACCAACAAATATTG
TTGTGTTTGAAGAGTCTCCTTCAGATTGAGGGCCTTGGCCTGGGGCACCA
TTTGACGCATACCCTCCTTGAGAAGAGTATTGCTGTTGATAACCAGAGGA
CTTCCTTGGAGTTGCAGCACCAATACGCATAGGCCTGCTTGAACAATAGA
CACCATTCATTTCAGTCATGGCCTGGGACCTCTCATTATCATCTCCAAAC
CTTACAAAACCATAACCTTTTGATCGACCAGTATTGGCATCAAAGACAAC
TTTTGCTGCTTTAACAGAAGGATATCTACTAGCAAAAGTTTCATG
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