DT214494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11 Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874 Y ++ KV+ DA+ G+SKG+GFVR+ +A+ +++G + + +G A + + + PG I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG ++G + + ++ G+ Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11 Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874 Y ++ KV+ DA+ G+SKG+GFVR+ +A+ +++G + + +G A + + + PG I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG ++G + + ++ G+ Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11 Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874 Y ++ KV+ DA+ G+SKG+GFVR+ +A+ +++G + + +G A + + + PG I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG ++G + + ++ G+ Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.329e-11 Identity = 43/168 (25.60%), Postives = 83/168 (49.40%), Query Frame = -1 Query: 389 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR--KXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 874 Y ++ KV+ DA+ G+SKG+GFVR+ +A+ +++G + + +G A + + + PG I++ LD + DE L++ FS +G I+ K+ + GKG G V F++ E A +A+ ++NG ++G + + ++ G+ Sbjct: 222 YGPTESVKVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG-----------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11 Identity = 48/158 (30.38%), Postives = 74/158 (46.84%), Query Frame = -1 Query: 419 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIG 880 S++ + + KV+ D N+G S+ +GFV F E +A+ MNG S R + G A R QG ++V LD ++ D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG ++G Sbjct: 212 SQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQG---------VNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11 Identity = 47/173 (27.17%), Postives = 80/173 (46.24%), Query Frame = -1 Query: 371 RYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 877 +Y + KV+ D N G+SKG+GFV F + +A+ EMNG + + M +G A + QG ++V LD + DE LR+ F +G I S K+ + KG GFV F++ E A +A+ ++NG ++ + + ++ + +Q Sbjct: 213 KYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 HSP 2 Score: 68.1662 bits (165), Expect = 7.416e-11 Identity = 50/180 (27.78%), Postives = 85/180 (47.22%), Query Frame = -1 Query: 371 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-----GKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPANKQ 895 ++TF S + ++ + KVV D N SKGYGFV F +A+ +MNG+ + R + +G RK A GA + T +++ ++ DE L++ F +YG SVK+ KG GFV F E+A++A+ ++NG + +S+ + + +Q Sbjct: 116 YDTF-SAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK-----------EREAELGARAK--------EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQ 273
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: C3H49_ORYSJ (Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.348e-11 Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = -1 Query: 347 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKL-NGTVIGKQSVRLSWGRNPANKQFRADYGNQ 616 D S T+++GGLD VT++DLR F +GEI ++++ + + C FV + RE AE+A +L N VI ++L WG+ A K + G Q Sbjct: 224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGKPQAPKPEEDEAGRQ 314
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: SR140_PONAB (U2-associated protein SR140 OS=Pongo abelii GN=SR140 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11 Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -1 Query: 389 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 634 G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV F NR +AE AL LNG +I ++L WG+ Sbjct: 263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 353
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: SR140_HUMAN (U2-associated protein SR140 OS=Homo sapiens GN=SR140 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11 Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -1 Query: 389 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 634 G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV F NR +AE AL LNG +I ++L WG+ Sbjct: 264 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGK 354
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11 Identity = 47/173 (27.17%), Postives = 80/173 (46.24%), Query Frame = -1 Query: 374 VKAAKVVFDANT-GRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI------PVGKGCGFVQFANRENAEEALHKLNGTVI--GKQSVRLSWGRNPANK 865 +++ K+V D T G+S GYGFV + D + +A+ +NG+ ++ +++ A P S + ++V GL +T ++L Q FSQYG I + +I V +G GF++F R AEEA+ LNG + + + + NP+ K Sbjct: 92 IESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP---------------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237 The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bpback to top |