EY680081

Overview
NameEY680081
Unique NameEY680081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCSK (Peptide chain release factor 2 OS=Mycobacterium sp. (strain KMS) GN=prfB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.313e-20
Identity = 67/209 (32.06%), Postives = 106/209 (50.72%), Query Frame = 1
Query:   88 RIKQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEME----AIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFPGT 693
            +++QEA   + NLWDD +++ +V  +L+ +   +  +++LR + E+  ++ ++A  E    A + G    A  A L V   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA++  Y   V D    +  G+KSAT      YA+G LS E G H L+    F N S        V +L  V+   H   P T
Sbjct:   34 KLEQEAS--DPNLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADAELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSRRQTSFADVEVLPVVETTDHIDVPET 238          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCSJ (Peptide chain release factor 2 OS=Mycobacterium sp. (strain JLS) GN=prfB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.313e-20
Identity = 67/209 (32.06%), Postives = 106/209 (50.72%), Query Frame = 1
Query:   88 RIKQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEME----AIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFPGT 693
            +++QEA   + NLWDD +++ +V  +L+ +   +  +++LR + E+  ++ ++A  E    A + G    A  A L V   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA++  Y   V D    +  G+KSAT      YA+G LS E G H L+    F N S        V +L  V+   H   P T
Sbjct:   34 KLEQEAS--DPNLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADAELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSRRQTSFADVEVLPVVETTDHIDVPET 238          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_CORA7 (Peptide chain release factor 2 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=prfB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.729e-20
Identity = 55/166 (33.13%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            EA   + +LWDDP  + +V  +L+     +  L  LR + E+  ++S+LAE E  D    +       ++   ++  E++ +L G  D   A + I++G+ G+    WAE L+ MY RWA+K G++  V D    +  G+KSAT     EY +G LS E GAH L+
Sbjct:   36 EAQAGDPSLWDDPDHAQKVTSELSAQQAKLRKLNSLRGRIEDLPVMSELAEEEG-DEASQELVETELKELGAAIESLEVTTMLSGEYDEREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKVDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLV 200          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SYNPX (Peptide chain release factor 2 OS=Synechococcus sp. (strain WH8102) GN=prfB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            E +    + WDD   + + + +L +    +  L D     ++AK   +L E+E  D  +   A      + + LD++E+ +LL G  D EGA +TI AG+ G   + WA+ LL MY RWA+  G +  V +    +  G+KS TIE E  YA+GYL  E G H L+
Sbjct:   37 EQLAAQPDFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLELYELEP-DEEMLTEAQEGLNQLRQGLDRWELERLLSGDYDKEGAVLTINAGAGGTDAQDWAQMLLRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLV 201          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCA9 (Peptide chain release factor 2 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=prfB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.148e-19
Identity = 63/204 (30.88%), Postives = 101/204 (49.51%), Query Frame = 1
Query:   88 RIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            RIK  E    + NLWDD  +  +V  +L+ +   +  +++LR + ++  ++ +LAE E+ D  +   A    + + + ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA+   Y   V D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   31 RIKTLEEAAADPNLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYELAE-ESEDNSVVAEADAERVKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEAHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFADVEVLPVVETTDHIDIP 233          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SACEN (Peptide chain release factor 2 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=prfB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 64/192 (33.33%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            +LWDD   +  V  +L      +  +KDLR + E+ +++ +L+E E  D GL + A      + K L+  E+  LL G  D   A VTI+A + G+    +AE L+ MYVRWA++  Y   V D    +  G+KSAT      YA+G LS E G H L+    F N          V +L  V+   H   P
Sbjct:   43 DLWDDVEHAQRVSSQLVHRQSELRKIKDLRQRVEDLEVLYELSEDEGDDSGLAE-ADSERTKLKKDLEALEVRTLLSGDYDQREAVVTIRAEAGGVDAADFAEMLMRMYVRWAERHEYPVEVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEETDHVEIP 233          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCS2 (Peptide chain release factor 2 OS=Mycobacterium smegmatis GN=prfB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.557e-19
Identity = 64/207 (30.92%), Postives = 102/207 (49.28%), Query Frame = 1
Query:   88 RIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            RI+Q E    + NLWDD T++ +V   L+ +   +  ++ LR + ++  ++ +LA     + G       A  +++KL   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA+K  Y   + D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   31 RIEQLEKDASDPNLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYELAA----EAGGPDEVAEADAELAKLREDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEKHDYPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFADVEVLPVVETTDHIEIP 233          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_NOCFA (Peptide chain release factor 2 OS=Nocardia farcinica GN=prfB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.361e-19
Identity = 62/200 (31.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKL-----LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFPGTQ 696
            +LW+D   +  V  +L+ +   +  ++DLR + E+  ++ +LAE E    G  + A     D  +      ++  E+  LL G  D   A V I++G+ G+    WAE L+ MY+RWAD+ GY   V D    +  G+KSAT   +  YA+G LS E G H L+    F N          V +L  V+   H   P T+
Sbjct:   43 DLWNDQDHAQRVTSELSHAQGELRRVEDLRRRLEDLPVLYELAEGEE---GEARTAALEEADAERAALHSDVEAMEVRTLLSGEYDKREALVNIRSGAGGVDAADWAEMLMRMYIRWADRHGYPVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEVLPVVETTDHIEVPETE 239          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_HAEIN (Peptide chain release factor 2 OS=Haemophilus influenzae GN=prfB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.361e-19
Identity = 53/159 (33.33%), Postives = 89/159 (55.97%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            ++W+DP K+  +  +     +VVN +K+L    E+   + +LA +EA D   F  A     ++ + L++ E  ++  G +D     V ++AGS G   + W E LL MY+RWA+ +G++  +++       G+KSATI+   EYAFG+L  ETG H L+
Sbjct:   45 DVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA-IEAEDEDTFNEAVAELDELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLV 202          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_RHOSR (Peptide chain release factor 2 OS=Rhodococcus sp. (strain RHA1) GN=prfB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.439e-19
Identity = 61/189 (32.28%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  124 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASL--DVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTH 675
            LW+D   + +V  +L+ S   +  +++LR + ++  ++ +LAE E  D      A R SL  D++ +    E+  +L G  D   A V I++G+ G+    WAE L+ MYVRWA+K GY   V D    +  G+KSAT   +  Y++G LS E G H L+    F N          V +L  V+   H
Sbjct:   44 LWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYELAEDEGADAIADADAERHSLREDIAAM----EVKTMLSGEYDERDALVNIRSGAGGVDAADWAEMLMRMYVRWAEKHGYGVEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVRISPFDNQGRRQTSFAEVEVLPVVETTDH 228          
The following BLAST results are available for this feature:
BLAST of EY680081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RF2_MYCSK2.313e-2032.06Peptide chain release factor 2 OS=Mycobacterium sp... [more]
RF2_MYCSJ2.313e-2032.06Peptide chain release factor 2 OS=Mycobacterium sp... [more]
RF2_CORA76.729e-2033.13Peptide chain release factor 2 OS=Corynebacterium ... [more]
RF2_SYNPX8.788e-2033.73Peptide chain release factor 2 OS=Synechococcus sp... [more]
RF2_MYCA91.148e-1930.88Peptide chain release factor 2 OS=Mycobacterium ab... [more]
RF2_SACEN1.958e-1933.33Peptide chain release factor 2 OS=Saccharopolyspor... [more]
RF2_MYCS22.557e-1930.92Peptide chain release factor 2 OS=Mycobacterium sm... [more]
RF2_NOCFA4.361e-1931.00Peptide chain release factor 2 OS=Nocardia farcini... [more]
RF2_HAEIN4.361e-1933.33Peptide chain release factor 2 OS=Haemophilus infl... [more]
RF2_RHOSR7.439e-1932.28Peptide chain release factor 2 OS=Rhodococcus sp. ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680081 ID=EY680081; Name=EY680081; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGGAAAAAGAAGATTGAAGATGCAGTTCTTCGTGCTGAGAG
TTTAGCAACAACAGCACTAGAACTCGAGGAAGCAACAAGAATTAAGCAGG
AAGCGATGGTCCGTAACTATAACCTTTGGGATGACCCAACTAAATCCAAT
GAAGTTCTTGTCAAGCTAGCTGACAGTCTCAAAGTAGTTAATGCTCTCAA
AGATCTACGATATAAGGCTGAGGAAGCAAAGTTGATATCACAGTTGGCTG
AGATGGAAGCTATCGATTATGGGCTTTTCAAGCGAGCATACCGTGCATCT
TTAGATGTGAGCAAGCTATTGGATCAGTATGAGATGTCCAAGCTTCTTCG
TGGGCCAAATGACGTGGAAGGAGCATCTGTAACTATTAAAGCTGGATCAA
ATGGCATCTGTCCTGAGATATGGGCAGAACAACTTCTCAACATGTATGTT
AGATGGGCTGACAAGGAAGGATATAGAGGAAGGGTAGTTGATAAGTGTTG
CTGCAAGAATGGTGGTGTCAAGTCCGCAACTATTGAATTCGAATTTGAGT
ATGCTTTTGGCTATCTTTCCGGAGAGACAGGTGCTCACTGGCTCATTAAT
TTTCCGAATGGTTCTTTTCCTCATGGAGTAAAAACTACGGTTTCCATTCT
GGCTAAAGTTCAGAGGGTAACCCATTTTCTCTTCCCTGGAACCCAAAGCC
CCCCCAAAAACATTTCTGATTACTTTCCTAAAAAATCATTTTTTGGCCAA
AAGCTTCTAAAATCATTTTTTATTTCAAATTACCCTTTTTTTGGGGAATT
GTTTTTCCCAATGTGTATGCCCATTTAGTGCCCCCGGGTGACCCTTTTTT
TGTTAAATATAAAATTGAATTTTTGTCTGAGGAACACATTAACCAAG
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