EY680081

Overview
NameEY680081
Unique NameEY680081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCTU (Peptide chain release factor 2 OS=Mycobacterium tuberculosis GN=prfB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.822e-18
Identity = 61/204 (29.90%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   94 KQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            K E    + +LWDD T++  V  +L+ +   +  +++LR + ++  ++ +LA  EA           A  ++  L   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA++  Y   V D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   34 KLEHEASDPHLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYELAAEEA-GAAAADAVAEADAELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFAEVEVLPVVETTDHIDIP 236          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCBO (Peptide chain release factor 2 OS=Mycobacterium bovis GN=prfB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.822e-18
Identity = 61/204 (29.90%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   94 KQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            K E    + +LWDD T++  V  +L+ +   +  +++LR + ++  ++ +LA  EA           A  ++  L   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA++  Y   V D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   34 KLEHEASDPHLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYELAAEEA-GAAAADAVAEADAELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFAEVEVLPVVETTDHIDIP 236          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_STRCO (Peptide chain release factor 2 OS=Streptomyces coelicolor GN=prfB PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 60/188 (31.91%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTH 675
            +LWDDP  + ++  KL+     V   + LR + ++  ++ ++AE E  D      A      V K LD+ E+  LL G  D   A V I+A + G+    +AE+L  MY+RWA++ GY+  V +    +  G+KS T   +  YA+G LS E G H L+    F N          V IL  V++  H
Sbjct:   44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFEMAEEED-DPDTRAEAESELAAVRKALDEMEVRTLLSGEYDAREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQHGYKTEVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEILPVVEQTDH 230          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_PROMH (Peptide chain release factor 2 OS=Proteus mirabilis (strain HI4320) GN=prfB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 62/209 (29.67%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   13 KKKIEDAVLRAESXXXXXXXXXXXXRIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            K KIE+   R +             R+++  A +   ++W++P K+ + L K   SL+ +V  +  L    E+   +  LA +EA D   F  A      ++K L+Q E  ++  G  D     + ++AGS G   + WA  L+ MY+RWA+  G++  ++++      G+KSATI+   EYA+G+L  ETG H L+    F +G   H
Sbjct:    8 KHKIEEVAERTQVLRGYLDYDAKKERLEEVNAELEQPDVWNEPEKA-QALGKERSSLEAIVETIDQLEQGLEDVSGLLDLA-VEADDEETFNEAVAELEGLNKKLEQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESRGFKTEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCUA (Peptide chain release factor 2 OS=Mycobacterium ulcerans (strain Agy99) GN=prfB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 65/209 (31.10%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   94 KQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEME---AIDYGLFK-----RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            K E    +  LWDD T++  V  +L+ +   +  +++LR + E+  ++ +LA  E   A    L +     +A RA ++ +      E+  LL G  D   A VTI++G+ G+    WAE L+ MYVRWA++  Y   V D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   34 KLEHEASDPKLWDDQTRAQRVTSELSHTQGELRRVEELRRRLEDLPVLYELAAEEEGAAAGEALTEADAEFKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYVRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFAEVEVLPVVETTDHIDIP 236          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCMM (Peptide chain release factor 2 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=prfB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 65/209 (31.10%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   94 KQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEME---AIDYGLFK-----RAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            K E    +  LWDD T++  V  +L+ +   +  +++LR + E+  ++ +LA  E   A    L +     +A RA ++ +      E+  LL G  D   A VTI++G+ G+    WAE L+ MYVRWA++  Y   V D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   34 KLEHEASDPKLWDDQTRAQRVTSELSHTQGELRRVEELRRRLEDLPVLYELAAEEEGAAAGEALAEADAEFKALRADIEAT------EVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYVRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFAEVEVLPVVETTDHIDIP 236          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_STRAW (Peptide chain release factor 2 OS=Streptomyces avermitilis GN=prfB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTH 675
            +LWDDP  + ++  KL+     V   + LR + ++  ++ ++AE E  D      A      V K LD+ E+  LL G  D   A V I+A + G+    +AE+L  MY+RWA++ GY+  + +    +  G+KS T   +  YA+G LS E G H L+    F N          V IL  V+   H
Sbjct:   44 SLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFEMAEEED-DPDTRAEAESELTAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEQRGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEILPVVETTDH 230          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_PASMU (Peptide chain release factor 2 OS=Pasteurella multocida GN=prfB PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 57/196 (29.08%), Postives = 98/196 (50.00%), Query Frame = 1
Query:   13 KKKIEDAVLRAESXXXXXXXXXXXXRIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            + KI D   R +             R+++  A +   ++W++P K+  +  +      VVN +  L    E+ + + +LA +EA D   F  A     ++ + L + E  ++  G +D     V ++AGS G   + W E LL MY+RWA+ +G++  +++       G+KSATI+   EYAFG+L  ETG H L+
Sbjct:    8 RNKISDLTERTQVLRGYLDFDAKVERLEEVNAELEQPDVWNEPEKAQALGKERVALEGVVNTIHTLDQGLEDVEGLLELA-IEAEDEATFHEAVAELEELEQQLAKLEFRRMFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGIKSATIKVSGEYAFGWLRTETGIHRLV 202          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_STAHJ (Peptide chain release factor 2 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=prfB PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.074e-17
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            E M+   + WDD  K+ +V+ K      VVN   +L  + E+     +L + E +D  +     +  LD  + +DQ+E+  LL GP+D   A + +  G+ G   + WA  LL MY R+ +++G++   VD       GVKS T+  +   A+GYL  E G H L+
Sbjct:   37 EEMMTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQ-EELDGDVKSDLEQNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQQGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLV 201          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCA1 (Peptide chain release factor 2 OS=Mycobacterium avium (strain 104) GN=prfB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.074e-17
Identity = 60/204 (29.41%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   94 KQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKL---LDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            K E    +  LWDD  ++  V  +L+ +   +  +++LR + ++  ++ +LA  E    G  +    A  ++  L   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA++  Y   V D    +  G+KSAT      +A+G LS E G H L+    F N S        V +L  V+   H   P
Sbjct:   34 KLEHEASDPQLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYELAAEEG--EGAAEALAEADAELKALRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAADWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVRISPFDNQSRRQTSFAEVEVLPVVETTDHIDIP 235          
The following BLAST results are available for this feature:
BLAST of EY680081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RF2_MYCTU4.822e-1829.90Peptide chain release factor 2 OS=Mycobacterium tu... [more]
RF2_MYCBO4.822e-1829.90Peptide chain release factor 2 OS=Mycobacterium bo... [more]
RF2_STRCO6.298e-1831.91Peptide chain release factor 2 OS=Streptomyces coe... [more]
RF2_PROMH6.298e-1829.67Peptide chain release factor 2 OS=Proteus mirabili... [more]
RF2_MYCUA6.298e-1831.10Peptide chain release factor 2 OS=Mycobacterium ul... [more]
RF2_MYCMM6.298e-1831.10Peptide chain release factor 2 OS=Mycobacterium ma... [more]
RF2_STRAW8.225e-1831.38Peptide chain release factor 2 OS=Streptomyces ave... [more]
RF2_PASMU8.225e-1829.08Peptide chain release factor 2 OS=Pasteurella mult... [more]
RF2_STAHJ1.074e-1731.33Peptide chain release factor 2 OS=Staphylococcus h... [more]
RF2_MYCA11.074e-1729.41Peptide chain release factor 2 OS=Mycobacterium av... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680081 ID=EY680081; Name=EY680081; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGGAAAAAGAAGATTGAAGATGCAGTTCTTCGTGCTGAGAG
TTTAGCAACAACAGCACTAGAACTCGAGGAAGCAACAAGAATTAAGCAGG
AAGCGATGGTCCGTAACTATAACCTTTGGGATGACCCAACTAAATCCAAT
GAAGTTCTTGTCAAGCTAGCTGACAGTCTCAAAGTAGTTAATGCTCTCAA
AGATCTACGATATAAGGCTGAGGAAGCAAAGTTGATATCACAGTTGGCTG
AGATGGAAGCTATCGATTATGGGCTTTTCAAGCGAGCATACCGTGCATCT
TTAGATGTGAGCAAGCTATTGGATCAGTATGAGATGTCCAAGCTTCTTCG
TGGGCCAAATGACGTGGAAGGAGCATCTGTAACTATTAAAGCTGGATCAA
ATGGCATCTGTCCTGAGATATGGGCAGAACAACTTCTCAACATGTATGTT
AGATGGGCTGACAAGGAAGGATATAGAGGAAGGGTAGTTGATAAGTGTTG
CTGCAAGAATGGTGGTGTCAAGTCCGCAACTATTGAATTCGAATTTGAGT
ATGCTTTTGGCTATCTTTCCGGAGAGACAGGTGCTCACTGGCTCATTAAT
TTTCCGAATGGTTCTTTTCCTCATGGAGTAAAAACTACGGTTTCCATTCT
GGCTAAAGTTCAGAGGGTAACCCATTTTCTCTTCCCTGGAACCCAAAGCC
CCCCCAAAAACATTTCTGATTACTTTCCTAAAAAATCATTTTTTGGCCAA
AAGCTTCTAAAATCATTTTTTATTTCAAATTACCCTTTTTTTGGGGAATT
GTTTTTCCCAATGTGTATGCCCATTTAGTGCCCCCGGGTGACCCTTTTTT
TGTTAAATATAAAATTGAATTTTTGTCTGAGGAACACATTAACCAAG
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