EY680081

Overview
NameEY680081
Unique NameEY680081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_CLOP1 (Peptide chain release factor 2 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.094e-17
Identity = 50/166 (30.12%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            E  ++    WDD  K+ EV  +       ++  K+L  + ++ +++ +L  ME  D    K        +SK +D  ++  +L G  D   A +T+  G  G     W E LL MY RW +K+GY    +D       GVKS T++ + E+A+GYL  E G H L+
Sbjct:   37 ELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL--MEENDEETAKEIISEVKALSKEIDTLKIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLV 200          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SALTY (Peptide chain release factor 2 OS=Salmonella typhimurium GN=prfB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 55/172 (31.98%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++ + L K   SL+ +V+ L  +    ++   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  LL MY+RWA+  G++  V+++   +  G+KSATI+   EYA+G+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERA-QALGKERSSLEAIVDTLDQMTQGLDDVSGLLELA-VEADDEETFNEAVAELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SALTI (Peptide chain release factor 2 OS=Salmonella typhi GN=prfB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 55/172 (31.98%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++ + L K   SL+ +V+ L  +    ++   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  LL MY+RWA+  G++  V+++   +  G+KSATI+   EYA+G+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERA-QALGKERSSLEAIVDTLDQMTQGLDDVSGLLELA-VEADDEETFNEAVAELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SALPK (Peptide chain release factor 2 OS=Salmonella paratyphi A (strain AKU_12601) GN=prfB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 55/172 (31.98%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++ + L K   SL+ +V+ L  +    ++   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  LL MY+RWA+  G++  V+++   +  G+KSATI+   EYA+G+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERA-QALGKERSSLEAIVDTLDQMTQGLDDVSGLLELA-VEADDEETFNEAVAELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SALPA (Peptide chain release factor 2 OS=Salmonella paratyphi A GN=prfB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 55/172 (31.98%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++ + L K   SL+ +V+ L  +    ++   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  LL MY+RWA+  G++  V+++   +  G+KSATI+   EYA+G+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERA-QALGKERSSLEAIVDTLDQMTQGLDDVSGLLELA-VEADDEETFNEAVAELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_HAEDU (Peptide chain release factor 2 OS=Haemophilus ducreyi GN=prfB PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.188e-16
Identity = 50/158 (31.65%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  124 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            +W+ P K+  +  + +    VVN +  L    E+ + + +LA +EA D      A   + +++  L + E  ++  GP D     + ++AGS G   + W E LL MY+RWA+ +G++  +++       G+KSATI    EYAFG+L  ETG H L+
Sbjct:   46 IWNTPEKAQTLGKERSTLEMVVNTINALIQGIEDVEALIELA-VEAEDEQTLYEAQIEADELATKLAKLEFQRMFSGPYDATDCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSATIRITGEYAFGWLRTETGIHRLV 202          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_THELT (Peptide chain release factor 2 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=prfB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.026e-16
Identity = 48/168 (28.57%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   94 KQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            K E+ + +  +W D  K+ E+  K+    ++++ + ++    E+  +  +L+E    D G+ +   +   +V K + ++++  +L  P D   A ++I  G+ G     WA+ LL MY+RWA+++G+   ++D    +  G+KSATI  + EYA+GYL  E G H L+
Sbjct:   35 KMESEMSDPEIWKDQRKAGEISKKVRRIKELLSDISEIERNFEDIDVGIELSEE---DPGIAQDIEKIVQEVEKNIRRFQLELILNDPLDQNNAYLSIHPGAGGTESHDWAQMLLRMYMRWAERKGFIVELLDFQPGEEAGLKSATILVKGEYAYGYLKHERGVHRLV 199          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_HYPNA (Peptide chain release factor 2 OS=Hyphomonas neptunium (strain ATCC 15444) GN=prfB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  103 AMVRNYNLWDDPTKSNEVL---VKLADSLKVVNAL-KDLRYKAEEAKLI----SQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            A+    N WDDP ++  ++    KLAD + +V  L KD+    E  +L     S LA++EA    L + A RA+        + E++ LL G  D     + I AG  G   + WA  L  MYVRWA+K GY   ++D+   +  G+KSAT++ + E A+G+L  E G H L+
Sbjct:   37 ALSERPNFWDDPQEAQAMMRERQKLADGIALVQTLEKDVADAPELMELAEGDASMLADLEAT---LRRAAARAA--------EAELAALLSGEADGNDCYLQINAGEGGTESQDWASILRRMYVRWAEKRGYGVELLDERDGEEAGIKSATLQIKGENAYGWLKSEQGVHRLV 198          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_KLEP3 (Peptide chain release factor 2 OS=Klebsiella pneumoniae (strain 342) GN=prfB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16
Identity = 58/209 (27.75%), Postives = 105/209 (50.24%), Query Frame = 1
Query:   13 KKKIEDAVLRAESXXXXXXXXXXXXRIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            K +I+D   R++             R+++  A +   ++W++P ++ + L K   SL+ +V+ L  +    E+   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  L+ MY+RWA+  G++  ++++   +  G+KS TI+   +YA+G+L  ETG H L+    F +G   H
Sbjct:    8 KNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERA-QALGKERSSLEAIVDTLDQMSQGLEDVAGLLELA-VEAEDEETFNEAVAELDGLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SHIFL (Peptide chain release factor 2 OS=Shigella flexneri GN=prfB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 58/207 (28.02%), Postives = 104/207 (50.24%), Query Frame = 1
Query:   19 KIEDAVLRAESXXXXXXXXXXXXRIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            +I+D   R++             R+++  A +   ++W++P ++ + L K   SL+ VV+ L  ++   E+   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  L  MY+RWA+  G++  ++++   +  G+KS TI+   +YA+G+L  ETG H L+    F +G   H
Sbjct:   10 RIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
The following BLAST results are available for this feature:
BLAST of EY680081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RF2_CLOP19.094e-1730.12Peptide chain release factor 2 OS=Clostridium perf... [more]
RF2_SALTY1.188e-1631.98Peptide chain release factor 2 OS=Salmonella typhi... [more]
RF2_SALTI1.188e-1631.98Peptide chain release factor 2 OS=Salmonella typhi... [more]
RF2_SALPK1.188e-1631.98Peptide chain release factor 2 OS=Salmonella parat... [more]
RF2_SALPA1.188e-1631.98Peptide chain release factor 2 OS=Salmonella parat... [more]
RF2_HAEDU1.188e-1631.65Peptide chain release factor 2 OS=Haemophilus ducr... [more]
RF2_THELT2.026e-1628.57Peptide chain release factor 2 OS=Thermotoga letti... [more]
RF2_HYPNA3.456e-1634.68Peptide chain release factor 2 OS=Hyphomonas neptu... [more]
RF2_KLEP34.513e-1627.75Peptide chain release factor 2 OS=Klebsiella pneum... [more]
RF2_SHIFL7.698e-1628.02Peptide chain release factor 2 OS=Shigella flexner... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680081 ID=EY680081; Name=EY680081; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGGAAAAAGAAGATTGAAGATGCAGTTCTTCGTGCTGAGAG
TTTAGCAACAACAGCACTAGAACTCGAGGAAGCAACAAGAATTAAGCAGG
AAGCGATGGTCCGTAACTATAACCTTTGGGATGACCCAACTAAATCCAAT
GAAGTTCTTGTCAAGCTAGCTGACAGTCTCAAAGTAGTTAATGCTCTCAA
AGATCTACGATATAAGGCTGAGGAAGCAAAGTTGATATCACAGTTGGCTG
AGATGGAAGCTATCGATTATGGGCTTTTCAAGCGAGCATACCGTGCATCT
TTAGATGTGAGCAAGCTATTGGATCAGTATGAGATGTCCAAGCTTCTTCG
TGGGCCAAATGACGTGGAAGGAGCATCTGTAACTATTAAAGCTGGATCAA
ATGGCATCTGTCCTGAGATATGGGCAGAACAACTTCTCAACATGTATGTT
AGATGGGCTGACAAGGAAGGATATAGAGGAAGGGTAGTTGATAAGTGTTG
CTGCAAGAATGGTGGTGTCAAGTCCGCAACTATTGAATTCGAATTTGAGT
ATGCTTTTGGCTATCTTTCCGGAGAGACAGGTGCTCACTGGCTCATTAAT
TTTCCGAATGGTTCTTTTCCTCATGGAGTAAAAACTACGGTTTCCATTCT
GGCTAAAGTTCAGAGGGTAACCCATTTTCTCTTCCCTGGAACCCAAAGCC
CCCCCAAAAACATTTCTGATTACTTTCCTAAAAAATCATTTTTTGGCCAA
AAGCTTCTAAAATCATTTTTTATTTCAAATTACCCTTTTTTTGGGGAATT
GTTTTTCCCAATGTGTATGCCCATTTAGTGCCCCCGGGTGACCCTTTTTT
TGTTAAATATAAAATTGAATTTTTGTCTGAGGAACACATTAACCAAG
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