EY680081

Overview
NameEY680081
Unique NameEY680081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SHEB2 (Peptide chain release factor 2 OS=Shewanella baltica (strain OS223) GN=prfB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  124 LWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            +W+DP ++  +  + A    VV  + D+    E+ + + +LA +E  D   F    +    +   L   E  ++  GP D     + I++GS G   + WA  +L MY+RW +  G+   +++       G+K ATI+F  EYAFG+L  ETG H L+
Sbjct:   46 VWNDPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA-IEEEDEDTFNETSKELDYLESRLADLEFRRMFSGPQDASNCYLDIQSGSGGTEAQDWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 202          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_ECO8A (Peptide chain release factor 2 OS=Escherichia coli O8 (strain IAI1) GN=prfB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 53/172 (30.81%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++ + L K   SL+ VV+ L  ++   E+   + +LA +EA D   F  A      + + L Q E  ++  G  D     + I+AGS G   + WA  L  MY+RWA+  G++  ++++   +  G+KS TI+   +YA+G+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERA-QALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA-VEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_YERPS (Peptide chain release factor 2 OS=Yersinia pseudotuberculosis GN=prfB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++  +  + +   ++V  +  L    E+   + +LA +EA D   F         +   L Q E  ++  G  D     + ++AGS G   + WA  LL MY+RWA+  G++  ++++      G+KSAT++   EYAFG+L  ETG H L+    F +G   H
Sbjct:   46 DVWNEPERAQALGKERSTLEEIVTTIDQLEQGLEDVSGLLELA-VEADDEETFNETIAELEVLDGKLGQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLKSATVKIIGEYAFGWLRTETGVHRLVRKSPFDSGGRRH 215          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_YERPE (Peptide chain release factor 2 OS=Yersinia pestis GN=prfB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++  +  + +   ++V  +  L    E+   + +LA +EA D   F         +   L Q E  ++  G  D     + ++AGS G   + WA  LL MY+RWA+  G++  ++++      G+KSAT++   EYAFG+L  ETG H L+    F +G   H
Sbjct:   46 DVWNEPERAQALGKERSTLEEIVTTIDQLEQGLEDVSGLLELA-VEADDEETFNETIAELEVLDGKLGQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLKSATVKIIGEYAFGWLRTETGVHRLVRKSPFDSGGRRH 215          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_YERP3 (Peptide chain release factor 2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=prfB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++  +  + +   ++V  +  L    E+   + +LA +EA D   F         +   L Q E  ++  G  D     + ++AGS G   + WA  LL MY+RWA+  G++  ++++      G+KSAT++   EYAFG+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERAQALGKERSTLEEIVTTIDQLEQGLEDVSGLLELA-VEADDEETFNETIAELEVLDGKLGQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLKSATVKIIGEYAFGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_YERE8 (Peptide chain release factor 2 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=prfB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            ++W++P ++  +  + +   ++V  +  L    ++   + +LA +EA D   F  A  A LD+    L Q E  ++  G  D     + ++AGS G   + WA  LL MY+RWA+ +G++  ++++      G+KSATI+   +YAFG+L  ETG H L+    F +G   H
Sbjct:   45 DVWNEPERAQALGKERSSLEEIVTTIDQLDQGMDDVTGLLELA-IEADDEETFNEAV-AELDILDGKLGQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESDGDVAGLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_NITSB (Peptide chain release factor 2 OS=Nitratiruptor sp. (strain SB155-2) GN=prfB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 47/171 (27.49%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   88 RIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            R+K+ E +  + + W+D  K+ E+  +     +++   ++ R   E+AK + ++A  E  D       +  +  + + +++ E+  +L G ND + A VTI  G+ G   + WA  L  MY+RWA++ G++  V+D    +  G+K  +   + E A+GYL  E G H L+
Sbjct:   32 RLKEIEQLENSPDFWNDAKKAGEIQKEKNRLSRILEKFEEARSSVEDAKDLFEMATEEE-DTETLNMLFEEAPTLEEKVNKIEIETMLSGENDDKNAIVTIHPGAGGTESQDWASILYRMYLRWAERHGFKVEVLDYQEGEEAGIKDVSFIIKGENAYGYLKAENGIHRLV 201          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_ERWCT (Peptide chain release factor 2 OS=Erwinia carotovora subsp. atroseptica GN=prfB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 62/210 (29.52%), Postives = 104/210 (49.52%), Query Frame = 1
Query:   13 KKKIEDAVLRAESXXXXXXXXXXXXRIKQ-EAMVRNYNLWDDPTKSNEVLVKLADSLK-VVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDV-SKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPH 624
            K +I+D   R+              R+++  A +   ++W++P ++ + L K   SL+ +V+ +  L    E+   + +LA +E  D   F     A LDV    L Q E  ++  G  D     + I+AGS G   + WA  L+ MY+RWA+ +G++  ++++      G KSATI+   +YAFG+L  ETG H L+    F +G   H
Sbjct:    8 KNRIQDLAERSAVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERA-QALGKERSSLEAIVDTIDQLAQGLEDVTGLLELA-VEEDDEDTFNET-SAELDVLENKLGQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLVRMYLRWAEAKGFKTEIIEESDGDVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRH 214          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_STAS1 (Peptide chain release factor 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=prfB PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 50/166 (30.12%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            E M+ +   WD+  K+ +V+ K      VVNA + L  + E+      L  +E  D  + +   ++  D    LDQ+E+  LL GP D   A + +  G+ G   + W   LL MY R+ +++G+   + D       GVKS T+  +   A+GYL  E G H L+
Sbjct:   37 EEMMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALL-LEEDDETMKQDLEQSVQDFKNELDQFELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRYCEQKGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLV 201          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_STAES (Peptide chain release factor 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=prfB PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.821e-15
Identity = 47/166 (28.31%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            E M+ + + W+D TK+ +++ K      +VN    L    ++     +L + E  D  +            + +DQYE+  LL GP+D   A + +  G+ G   + W   LL MY R+ ++ G++   VD       GVKS T+  +   A+GYL  E G H L+
Sbjct:   37 EEMMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQ-EEYDEDMKIELEEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQNGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLV 201          
The following BLAST results are available for this feature:
BLAST of EY680081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RF2_SHEB21.313e-1529.75Peptide chain release factor 2 OS=Shewanella balti... [more]
RF2_ECO8A1.313e-1530.81Peptide chain release factor 2 OS=Escherichia coli... [more]
RF2_YERPS2.240e-1528.65Peptide chain release factor 2 OS=Yersinia pseudot... [more]
RF2_YERPE2.240e-1528.65Peptide chain release factor 2 OS=Yersinia pestis ... [more]
RF2_YERP32.240e-1528.65Peptide chain release factor 2 OS=Yersinia pseudot... [more]
RF2_YERE82.240e-1530.23Peptide chain release factor 2 OS=Yersinia enteroc... [more]
RF2_NITSB2.240e-1527.49Peptide chain release factor 2 OS=Nitratiruptor sp... [more]
RF2_ERWCT2.240e-1529.52Peptide chain release factor 2 OS=Erwinia carotovo... [more]
RF2_STAS12.925e-1530.12Peptide chain release factor 2 OS=Staphylococcus s... [more]
RF2_STAES3.821e-1528.31Peptide chain release factor 2 OS=Staphylococcus e... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680081 ID=EY680081; Name=EY680081; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGGAAAAAGAAGATTGAAGATGCAGTTCTTCGTGCTGAGAG
TTTAGCAACAACAGCACTAGAACTCGAGGAAGCAACAAGAATTAAGCAGG
AAGCGATGGTCCGTAACTATAACCTTTGGGATGACCCAACTAAATCCAAT
GAAGTTCTTGTCAAGCTAGCTGACAGTCTCAAAGTAGTTAATGCTCTCAA
AGATCTACGATATAAGGCTGAGGAAGCAAAGTTGATATCACAGTTGGCTG
AGATGGAAGCTATCGATTATGGGCTTTTCAAGCGAGCATACCGTGCATCT
TTAGATGTGAGCAAGCTATTGGATCAGTATGAGATGTCCAAGCTTCTTCG
TGGGCCAAATGACGTGGAAGGAGCATCTGTAACTATTAAAGCTGGATCAA
ATGGCATCTGTCCTGAGATATGGGCAGAACAACTTCTCAACATGTATGTT
AGATGGGCTGACAAGGAAGGATATAGAGGAAGGGTAGTTGATAAGTGTTG
CTGCAAGAATGGTGGTGTCAAGTCCGCAACTATTGAATTCGAATTTGAGT
ATGCTTTTGGCTATCTTTCCGGAGAGACAGGTGCTCACTGGCTCATTAAT
TTTCCGAATGGTTCTTTTCCTCATGGAGTAAAAACTACGGTTTCCATTCT
GGCTAAAGTTCAGAGGGTAACCCATTTTCTCTTCCCTGGAACCCAAAGCC
CCCCCAAAAACATTTCTGATTACTTTCCTAAAAAATCATTTTTTGGCCAA
AAGCTTCTAAAATCATTTTTTATTTCAAATTACCCTTTTTTTGGGGAATT
GTTTTTCCCAATGTGTATGCCCATTTAGTGCCCCCGGGTGACCCTTTTTT
TGTTAAATATAAAATTGAATTTTTGTCTGAGGAACACATTAACCAAG
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