DR912182

Overview
NameDR912182
Unique NameDR912182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length157
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.202e-24
Identity = 47/52 (90.38%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GA+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.202e-24
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG GA+KA+GRDIVDSHYKAC+YAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.051e-24
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG+GADK++GRDIVDSHYKACL+ G+NISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.051e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCGVGADKA GRDIVD+HYKACLYAGI ISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG GA+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYC  GADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 47/51 (92.16%), Postives = 51/51 (100.00%), Query Frame = 2
Query:    5 QGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            QGPYYCG+GADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP
Sbjct:  154 QGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 47/51 (92.16%), Postives = 51/51 (100.00%), Query Frame = 2
Query:    5 QGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            QGPYYCG+GADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP
Sbjct:  154 QGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCG GA+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP
Sbjct:  153 PQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGP 204          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.679e-24
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYC  GADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP
Sbjct:  153 PQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGP 204          
The following BLAST results are available for this feature:
BLAST of DR912182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA3_MAIZE1.202e-2490.38Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA2_SOYBN1.202e-2492.31Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA3_HORVU2.051e-2488.46Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLN13_ARATH2.051e-2494.23Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA_LUPLU2.679e-2492.31Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA5_MAIZE2.679e-2490.38Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA4_PEA2.679e-2492.16Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_PEA2.679e-2492.16Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA3_LUPAN2.679e-2492.31Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA1_MAIZE2.679e-2490.38Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20311 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912182 ID=DR912182; Name=DR912182; organism=Citrus sinensis; type=EST; length=157bp
GCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGC
GTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAAC
ATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGT
TGGTCCC
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