DR912182

Overview
NameDR912182
Unique NameDR912182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length157
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.594e-19
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCGVG  K   RDIVD+HYKACLY+G+ ISG N EVMP QWEFQVGP
Sbjct:  156 PQGPYYCGVGTGKVVQRDIVDAHYKACLYSGVKISGTNAEVMPAQWEFQVGP 207          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.859e-19
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCGVG  K   RDIV++HYK CLYAG+ ISG N EVMP QWEFQVGP
Sbjct:  158 PQGPYYCGVGTGKVVQRDIVEAHYKCCLYAGVKISGTNAEVMPAQWEFQVGP 209          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.859e-19
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    5 QGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            QGPYYCGVG  K + RDIV++HY+ACLYAG+ ISGIN EVMP QWE+QVGP
Sbjct:  143 QGPYYCGVGTGKVYCRDIVEAHYRACLYAGVKISGINAEVMPSQWEYQVGP 193          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.868e-18
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYCGVGAD+ + RD+V++H  ACLYAGI+ +G N EVMP QWEFQ+GP
Sbjct:  194 PQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGP 245          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.893e-18
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQG YYCGVG  K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP
Sbjct:  154 PQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGP 205          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.893e-18
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQG YYCGVG  K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP
Sbjct:  156 PQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGP 207          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.346e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVG 154
            PQG YYC VGAD+A+GR++V++HY+ACL+AG+NI G N EV PGQWEFQ+G
Sbjct:  161 PQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIG 211          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQG YYCGVGAD+ +GRD+V++H   CL AG+ ISGIN EVMPGQWEFQVGP
Sbjct:  135 PQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGP 186          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.410e-17
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    5 QGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            QGPYYC VGA ++ GRDI + HY+ CL+AGI ISG+NGEV+P QWE+QVGP
Sbjct:   35 QGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLPSQWEYQVGP 85          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.410e-17
Identity = 34/52 (65.38%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGP+YCGVGA+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP
Sbjct:  178 PQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGP 229          
The following BLAST results are available for this feature:
BLAST of DR912182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_COLGL2.594e-1976.92Glutamine synthetase OS=Colletotrichum gloeosporio... [more]
GLNA_NEUCR9.859e-1975.00Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_EMENI9.859e-1974.51Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA1_DROME2.868e-1869.23Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_GIBFU4.893e-1875.00Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_FUSSH4.893e-1875.00Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_CAEEL8.346e-1868.63Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA2_STRVR1.090e-1773.08Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA_DUNSA5.410e-1768.63Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA2_CHLRE5.410e-1765.38Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20311 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912182 ID=DR912182; Name=DR912182; organism=Citrus sinensis; type=EST; length=157bp
GCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGC
GTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAAC
ATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGT
TGGTCCC
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