DR912182

Overview
NameDR912182
Unique NameDR912182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length157
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.205e-16
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQGPYYC  GA  A GRD+ + HY+ CL AG+NISG+N EV+P QWE+QVGP
Sbjct:  180 PQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGP 231          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 1.574e-16
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            PQG YYCGVGADKA+ RDI+++HY+ACLYAG+ I+G   EV   QWEFQ+GP
Sbjct:  157 PQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGP 208          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.020e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVG 154
            PQ  YYCGVGAD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG
Sbjct:  132 PQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVG 182          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.513e-14
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    2 PQGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVG 154
            PQGPYYCGVG  K  GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G
Sbjct:  130 PQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIG 180          
BLAST of DR912182 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.549e-14
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    5 QGPYYCGVGADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 157
            QG YYC VG+  A+GR I D H +ACLYAGI ISG N EV PGQ EFQ+GP
Sbjct:  152 QGQYYCSVGSQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGP 202          
The following BLAST results are available for this feature:
BLAST of DR912182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA1_CHLRE1.205e-1665.38Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA_CRIGR1.574e-1667.31Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA2_STRHY1.020e-1568.63Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL2.513e-1466.67Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA_MIMIV9.549e-1466.67Putative glutamine synthetase OS=Acanthamoeba poly... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20311 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912182 ID=DR912182; Name=DR912182; organism=Citrus sinensis; type=EST; length=157bp
GCCTCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGC
GTGACATTGTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAAC
ATCAGTGGCATCAATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGT
TGGTCCC
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