DR912075

Overview
NameDR912075
Unique NameDR912075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length186
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.479e-19
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D++++S YDELR +LARMFG+EGQLEDP  S W+LV+ D END+LL+GDDPW+EFVN V
Sbjct:  974 DVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCV 1032          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.635e-18
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI ++S Y+EL+  LARMFG+EGQLED QR GW+LV+ D E+D+LLLGDDPW+EFVN V
Sbjct: 1025 DIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCV 1083          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.116e-18
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI+++  YDELR +LA MFG++GQLEDP R  W+LV+VD END+LL+GDDPW+EFV  V
Sbjct:  956 DITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCV 1014          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.116e-18
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI+++  YDELR +LA MFG++GQLEDP R  W+LV+VD END+LL+GDDPW+EFV  V
Sbjct:  956 DITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCV 1014          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.808e-17
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D+S+FS YDEL+  LARMF +EGQLE+ QR GW+LV+ D E+D+LLLGDDPW+EFV  V
Sbjct: 1043 DMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCV 1101          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.999e-16
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            DI+++S YDEL+ ++ARMFG+EGQL D  R GW+LV+ D E DVLL+GDDPW++FV  V
Sbjct: 1014 DINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCV 1072          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D++ F +Y ELR  +A MFGL+G+LE P  S W+LV+VD ENDVLL+GDDPW+EF+N V
Sbjct:  868 DVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCV 926          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D++ F +Y ELR  +A MFGL+G+LE P  S W+LV+VD ENDVLL+GDDPW+EF+N V
Sbjct:  868 DVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCV 926          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.770e-15
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D++ F  Y+EL+  +  MFGLEG L  PQ SGW+LV+VD E+DVLL+GDDPW+EFV  V
Sbjct:  809 DVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCV 867          
BLAST of DR912075 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.287e-12
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    3 DISKFSSYDELRGELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNV 179
            D+SKFS+YDEL+ EL +MF  +G+L    ++ WQ+V+ D E D++L+GDDPW+EF + V
Sbjct:  709 DLSKFSNYDELKAELDKMFEFDGELVSSNKN-WQIVYTDNEGDMMLVGDDPWEEFCSIV 766          
The following BLAST results are available for this feature:
BLAST of DR912075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ARFS_ARATH1.479e-1967.80Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFE_ORYSJ1.635e-1867.80Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFP_ORYSJ8.116e-1864.41Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI8.116e-1864.41Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFS_ORYSJ1.808e-1766.10Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFU_ORYSJ1.999e-1661.02Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ1.296e-1561.02Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI1.296e-1561.02Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ARATH3.770e-1559.32Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ2.287e-1250.85Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20203 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-06_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR912075 ID=DR912075; Name=DR912075; organism=Citrus sinensis; type=EST; length=186bp
TGGATATTTCCAAATTCAGCAGCTATGATGAGCTGCGTGGTGAGCTCGCT
CGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTG
GCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATG
ACCCTTGGCAGGAGTTTGTAAACAATGTGGGGTATA
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