DR911910

Overview
NameDR911910
Unique NameDR911910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length223
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.323e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKP-NMNIVS 188
            +I  AS H+  GAQ+VVISA S DAPMFV+GVNE  Y P +MNIVS
Sbjct:  175 SIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVS 220          

HSP 2 Score: 26.9498 bits (58), Expect = 1.323e-11
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1
Query:  190 DASCTTNCLAP 222
            +ASCTTNCLAP
Sbjct:  221 NASCTTNCLAP 231          

HSP 3 Score: 23.483 bits (49), Expect = 1.323e-11
Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:    4 WGDYGVDYVVESSGVFTQLR 63
            W   G  YVVES+GV+  ++
Sbjct:  158 WRAVGSPYVVESTGVYLSIQ 177          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.307e-11
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   63 KASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            KA+ H+KGGA+KV+ISA S DAPMFVVGVNEKTY P++++VS
Sbjct:  109 KAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPDIDVVS 150          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.307e-11
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            TI KASTH+KGGA+KV+ISA SADAPMFV GVN   Y P+M +VS
Sbjct:  101 TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVS 145          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.319e-11
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 3
Query:   63 KASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            KA+ H+KGGA+KVVISA S DAPMFVVGVNEK YK ++NIVS
Sbjct:  109 KAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSDINIVS 150          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.319e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   63 KASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            KA+ H+KGGA+KVVISA S DAPMFVVGVNEK YKP  +IVS
Sbjct:   98 KAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPEYDIVS 139          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.366e-11
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            T  KASTH+KGGA+KVVISA SADAPMFV GVN   Y P+M +VS
Sbjct:  101 TTEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYSPDMKVVS 145          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.366e-11
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            T  KAS H+KGGA+KV+ISA SADAPMFV+GVN K YK ++N++S
Sbjct:  104 TTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNKEYKTDINVLS 148          
BLAST of DR911910 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.621e-11
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 3
Query:   54 TIAKASTHMKGGAQKVVISASSADAPMFVVGVNEKTYKPNMNIVS 188
            TI KAS H KGGA+KVVISA SADAPMFV GVN + Y P+M +VS
Sbjct:  101 TIDKASAHFKGGAKKVVISAPSADAPMFVCGVNLEAYSPDMKVVS 145          
The following BLAST results are available for this feature:
BLAST of DR911910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
G3PT_HUMAN1.323e-1165.22Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PC_CRAPL3.307e-1171.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_DROME3.307e-1171.11Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3PE_MAIZE4.319e-1176.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC4.319e-1176.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DROHY7.366e-1171.11Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_ASPOR7.366e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_GLOMM9.621e-1171.11Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_20038 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911910 ID=DR911910; Name=DR911910; organism=Citrus sinensis; type=EST; length=223bp
TTTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATCTTCTGGAGTCTT
TACACAATTGCGAAAGCTTCCACTCACATGAAGGGTGGTGCCCAAAAGGT
GGTAATATCAGCTTCATCAGCTGATGCACCAATGTTTGTGGTAGGAGTGA
ATGAAAAGACATACAAGCCAAACATGAACATTGTTTCTTGATGCAAGTTG
TACTACCAATTGTCTTGCTCCTC
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