FC871204
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40 Identity = 87/168 (51.79%), Postives = 120/168 (71.43%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S FN+ +LKRL SRTNR P+S+SR+++ +K ++K AV V T+T+D R+L VPKL + AL+ + +AR RI+ AGG+ TFDQLAL++P G+ TVLL G ++ RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40 Identity = 94/168 (55.95%), Postives = 116/168 (69.05%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVV-----KNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K++ KP + N Y LL++LY+FLARRT+S FNK ILKRL QS+TNR PIS+S++ K+ + K V V TVT+D RLL VPKL++ AL+FT+ AR RI+ AGG+ T DQLAL+ PTG NTVLLRG K REA RHFG P H APYVR G+K ER Sbjct: 12 KSQRSKPA-SENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFER 175
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40 Identity = 90/166 (54.22%), Postives = 116/166 (69.88%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K R +P ++ + Y LL++LY+FL RRT FN+ ILKRL S+ NR P+S+ R+ + K ++ V V TVT+DARLLVVPKLT+ AL T+ ARERI+ AGG+ TFDQLALK+PTGKNT+LL+G + R A +HFG APG SHT PYVR G+K ER Sbjct: 13 KVRRTEP-KSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFER 177
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40 Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARR+ + FN+ +L+RL SRTNR PI+VSR+++ +K ++K+AV V TVT+D R+ +PKL I AL+ T+ AR RI+ AGGQ TFDQLAL +P G+ TVLL G K RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40 Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARR+ + FN+ +L+RL SRTNR PI+VSR+++ +K ++K+AV V TVT+D R+ +PKL I AL+ T+ AR RI+ AGGQ TFDQLAL +P G+ TVLL G K RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40 Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K R +P ++ + Y LL++LY+FL RRT FN+ ILKRL S+ NR P+S+ R+ + K ++ V V TVT+DARLLVVPKLT+ AL T+ ARERI+ AGG+ TFDQLAL++PTGKNT+LL+G + R A +HFG APG SHT PYVR G+K ER Sbjct: 12 KVRRTEP-KSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40 Identity = 92/167 (55.09%), Postives = 118/167 (70.66%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVK--NLKGQDK--VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K R KP ++ + Y LL++LY+FL RRT FNK IL+RL SRTN+ PIS+SRV K L+G+D+ +AV V TVTND R L PK+ + AL+ TEKARERI+ GG+ +TFDQLAL PTGKNTVL++G + REA HFG APG S+T PYV+ G+K E+ Sbjct: 12 KVRRTKP-KSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKGRKYEK 177
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39 Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S FN+ +LKRL SRTNR P+S+SR+++ +K ++K AV V T+T+D R+ VPKL + AL+ T +AR RI+ AGG+ TFDQLAL +P G TVLL G ++ RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3) HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39 Identity = 85/168 (50.60%), Postives = 118/168 (70.24%), Query Frame = 2 Query: 26 KNRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + T ++ + Y LL++LY+FLARR+++ FNK +LKRL S+TNR P+++SR+++ +K Q +K+AV V T+T+D R+L +PKL + AL+ T AR RI+ AGGQ TFDQLA+ P G+ TVLL G K RE RHFG APG SHT PY+R G+K ER Sbjct: 9 KDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_HUMAN (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39 Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S FN+ +LKRL SRTNR P+S+SR+++ +K ++K AV V T+T+D R+ VPKL + AL+ T +AR RI+ AGG+ TFDQLAL +P G TVLL G ++ RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176 The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bpback to top |