FC871204

Overview
NameFC871204
Unique NameFC871204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 87/168 (51.79%), Postives = 120/168 (71.43%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S FN+ +LKRL  SRTNR P+S+SR+++ +K    ++K AV V T+T+D R+L VPKL + AL+ + +AR RI+ AGG+  TFDQLAL++P G+ TVLL G ++ RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 94/168 (55.95%), Postives = 116/168 (69.05%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVV-----KNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K++  KP  + N Y  LL++LY+FLARRT+S FNK ILKRL QS+TNR PIS+S++      K+   + K  V V TVT+D RLL VPKL++ AL+FT+ AR RI+ AGG+  T DQLAL+ PTG NTVLLRG K  REA RHFG  P     H APYVR  G+K ER
Sbjct:   12 KSQRSKPA-SENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFER 175          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 90/166 (54.22%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K R  +P ++ + Y  LL++LY+FL RRT   FN+ ILKRL  S+ NR P+S+ R+ +  K  ++     V V TVT+DARLLVVPKLT+ AL  T+ ARERI+ AGG+  TFDQLALK+PTGKNT+LL+G +  R A +HFG APG   SHT PYVR  G+K ER
Sbjct:   13 KVRRTEP-KSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFER 177          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARR+ + FN+ +L+RL  SRTNR PI+VSR+++ +K    ++K+AV V TVT+D R+  +PKL I AL+ T+ AR RI+ AGGQ  TFDQLAL +P G+ TVLL G  K RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARR+ + FN+ +L+RL  SRTNR PI+VSR+++ +K    ++K+AV V TVT+D R+  +PKL I AL+ T+ AR RI+ AGGQ  TFDQLAL +P G+ TVLL G  K RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 89/166 (53.61%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K R  +P ++ + Y  LL++LY+FL RRT   FN+ ILKRL  S+ NR P+S+ R+ +  K  ++     V V TVT+DARLLVVPKLT+ AL  T+ ARERI+ AGG+  TFDQLAL++PTGKNT+LL+G +  R A +HFG APG   SHT PYVR  G+K ER
Sbjct:   12 KVRRTEP-KSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 92/167 (55.09%), Postives = 118/167 (70.66%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVK--NLKGQDK--VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K R  KP ++ + Y  LL++LY+FL RRT   FNK IL+RL  SRTN+ PIS+SRV K   L+G+D+  +AV V TVTND R L  PK+ + AL+ TEKARERI+  GG+ +TFDQLAL  PTGKNTVL++G +  REA  HFG APG   S+T PYV+  G+K E+
Sbjct:   12 KVRRTKP-KSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKGRKYEK 177          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S FN+ +LKRL  SRTNR P+S+SR+++ +K    ++K AV V T+T+D R+  VPKL + AL+ T +AR RI+ AGG+  TFDQLAL +P G  TVLL G ++ RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 85/168 (50.60%), Postives = 118/168 (70.24%), Query Frame = 2
Query:   26 KNRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  T  ++ + Y  LL++LY+FLARR+++ FNK +LKRL  S+TNR P+++SR+++ +K Q   +K+AV V T+T+D R+L +PKL + AL+ T  AR RI+ AGGQ  TFDQLA+  P G+ TVLL G  K RE  RHFG APG   SHT PY+R  G+K ER
Sbjct:    9 KDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_HUMAN (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S FN+ +LKRL  SRTNR P+S+SR+++ +K    ++K AV V T+T+D R+  VPKL + AL+ T +AR RI+ AGG+  TFDQLAL +P G  TVLL G ++ RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_RAT1.107e-4051.7960S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18B_SCHPO1.107e-4055.9560S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18_DROPS2.466e-4054.2260S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]
RL18_ORENI5.493e-4052.3860S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO5.493e-4052.3860S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_DROME5.493e-4053.6160S ribosomal protein L18 OS=Drosophila melanogast... [more]
RL18_AEDAE7.174e-4055.0960S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_MACFA1.598e-3951.7960S ribosomal protein L18 OS=Macaca fascicularis G... [more]
RL18_ICTPU1.598e-3950.6060S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_HUMAN1.598e-3951.7960S ribosomal protein L18 OS=Homo sapiens GN=RPL18... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AF07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bp
CGATCTTAAAGCCGGTGGCAGAACCAAGAACAGAAACATCAAGCCCACAA
GGACCACCAATCCTTACCACACCTTATTGATCAGACTCTACAAATTCTTG
GCCAGAAGAACCGAGTCTGCCTTCAATAAGACCATCCTTAAACGTCTCCA
CCAGTCTAGAACCAACCGTTACCCCATCAGCGTGTCCCGTGTCGTTAAGA
ACCTCAAGGGACAAGACAAAGTCGCTGTTTGCGTCACCACAGTCACAAAC
GACGCTAGACTTTTGGTCGTTCCCAAGCTCACTATCGTCGCTTTAAAGTT
CACTGAGAAAGCCAGAGAAAGAATCGTGGCTGCTGGTGGACAAGCTTGGA
CTTTCGATCAGCTCGCTCTTAAGAACCCCACTGGTAAAAACACTGTACTC
TTGAGAGGAGCTAAGAGAAGAGAAGCTCTTAGACACTTCGGTCCCGCTCC
AGGTGCTAAAGGCTCTCACACTGCTCCATATGTCAGAGGACACGGCAAGA
AGCAAGAGAGAATATAATAGTTGTATTAGATACGGATGCATATTTAGTCG
AGATGTTTACATATCCATAACACTGTTGACGGACCGAACGGATTTAGTGG
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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