FC871204
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39 Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 2 Query: 50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVS---RVVKNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 ++ NPY LL +LY FLARRT FN +LKRL SR NR P+S++ R V+ ++K V ++TVT+DARL VPK+++ AL TE AR RI+AAGG+ T DQLALK+P G+NTV L+G + REA +HFGPAPG SHT PYVR G+K ER Sbjct: 19 KSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39 Identity = 85/164 (51.83%), Postives = 118/164 (71.95%), Query Frame = 2 Query: 32 RNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG---QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 R KP ++ + Y LL++LY+FL RRT S FNK ILKRL S+ NR P+++S++V+ +K + +VAV V T+ +D R+ +PKLT+ AL+ T+KAR RI+ AGG+ TFDQLAL+ PTGKNTVL++G + REA +HFGPAPG SHT +VR G++ ER Sbjct: 14 RRTKP-KSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.726e-39 Identity = 87/158 (55.06%), Postives = 110/158 (69.62%), Query Frame = 2 Query: 50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPIS---VSRVVKNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 ++ NPY LL +LY FLARRT FN +LKRL SR NR P+S V+RVVK + K V ++TVT+DARL VPK+++ AL TE AR RI+AAGG+ T DQLAL++P G+NTV L+G + REA +HFGPAPG SHT P+VR G+K ER Sbjct: 19 KSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPHVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3) HSP 1 Score: 160.229 bits (404), Expect = 7.932e-39 Identity = 86/168 (51.19%), Postives = 116/168 (69.05%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S FN+ +LKRL SRTNR P+S+SR+++ +K + K AV V T+T+D R+ VPKL + AL+ + +AR RI+ AGG+ TFDQLAL +P G TVLL G ++ RE RHFG APG SHT PYVR G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3) HSP 1 Score: 158.688 bits (400), Expect = 2.308e-38 Identity = 83/168 (49.40%), Postives = 123/168 (73.21%), Query Frame = 2 Query: 29 NRNIKPTR--TTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRV--VKNLKGQDK--VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 +R ++ TR + + Y +LL++LY+FL RRT+ FNK +++RL SRTN P+S++RV + L+G+D+ VAV + TVTND R++ VPKL + AL+ T+KAR+RI+ GG+ +TFDQLAL +PTG+NTVL++G + RE +HFG APG S+T PYV+ G+K E+ Sbjct: 10 DRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKGRKFEK 177
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.014e-38 Identity = 87/161 (54.04%), Postives = 108/161 (67.08%), Query Frame = 2 Query: 29 NRNIKPTRTTNP-----YHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG---QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYV 484 +RN + NP Y L+++LYKFLARRT S FN + +RL SR NR P+S+SR+ + +K + K+AV + TVTND R+ VPKLT+ AL+ T AR RI+ AGG+ T DQLALK P GK TVLL+G K REA RHFGPAPG GSHT PYV Sbjct: 7 HRNKRKVVRRNPKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYV 167
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 3.937e-38 Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S+FN+ +LKRL SRTNR P+S+SR+++ +K ++K AV V +T D R+ +PKLT+ ALK T AR RI+ AGGQ TFDQLAL P G+NTVLL G K RE RHFG AP S T PYV G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.496e-37 Identity = 83/158 (52.53%), Postives = 113/158 (71.52%), Query Frame = 2 Query: 50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG---QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 ++ N Y LL+++Y+FLARR+ + FN+ +LKRL SR N+ IS++RV + +K ++ +AV V TVT+D RL VPKL + AL+ TE+AR RI+ AGG+ TFDQLA++ P GK TVL++G + REA RHFGPAPG SHT PYVR G+K ER Sbjct: 19 KSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4) HSP 1 Score: 155.606 bits (392), Expect = 1.954e-37 Identity = 86/168 (51.19%), Postives = 113/168 (67.26%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K+R + K ++ + Y LL++LY+FLARRT S+FN+ +LKRL SRTNR P+S+SR+++ +K Q +K AV V +T+D R+ +PKL + ALK T R RI+ +GGQ TFDQLAL P G+NTVLL G K RE RHFG APG S T PYV G+K ER Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37 Identity = 84/166 (50.60%), Postives = 117/166 (70.48%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K R +P R+ + Y LL+++Y+FLARRT S F++ ILKRL SR N PIS++RV + +K + + +AV V T+T+DAR+ +PKL + AL+ TEKAR RI+ AGG+ TF++LA +PTG TVL++G + REA++HFGPAPG SHT P VR G+K ER Sbjct: 12 KVRRTEP-RSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFER 176 The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bpback to top |