FC871204

Overview
NameFC871204
Unique NameFC871204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.598e-39
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVS---RVVKNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            ++ NPY  LL +LY FLARRT   FN  +LKRL  SR NR P+S++   R V+    ++K  V ++TVT+DARL  VPK+++ AL  TE AR RI+AAGG+  T DQLALK+P G+NTV L+G +  REA +HFGPAPG   SHT PYVR  G+K ER
Sbjct:   19 KSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 85/164 (51.83%), Postives = 118/164 (71.95%), Query Frame = 2
Query:   32 RNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG---QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            R  KP ++ + Y  LL++LY+FL RRT S FNK ILKRL  S+ NR P+++S++V+ +K    + +VAV V T+ +D R+  +PKLT+ AL+ T+KAR RI+ AGG+  TFDQLAL+ PTGKNTVL++G +  REA +HFGPAPG   SHT  +VR  G++ ER
Sbjct:   14 RRTKP-KSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.726e-39
Identity = 87/158 (55.06%), Postives = 110/158 (69.62%), Query Frame = 2
Query:   50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPIS---VSRVVKNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            ++ NPY  LL +LY FLARRT   FN  +LKRL  SR NR P+S   V+RVVK    + K  V ++TVT+DARL  VPK+++ AL  TE AR RI+AAGG+  T DQLAL++P G+NTV L+G +  REA +HFGPAPG   SHT P+VR  G+K ER
Sbjct:   19 KSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPHVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.932e-39
Identity = 86/168 (51.19%), Postives = 116/168 (69.05%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S FN+ +LKRL  SRTNR P+S+SR+++ +K    + K AV V T+T+D R+  VPKL + AL+ + +AR RI+ AGG+  TFDQLAL +P G  TVLL G ++ RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.308e-38
Identity = 83/168 (49.40%), Postives = 123/168 (73.21%), Query Frame = 2
Query:   29 NRNIKPTR--TTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRV--VKNLKGQDK--VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAK-RREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            +R ++ TR  + + Y +LL++LY+FL RRT+  FNK +++RL  SRTN  P+S++RV  +  L+G+D+  VAV + TVTND R++ VPKL + AL+ T+KAR+RI+  GG+ +TFDQLAL +PTG+NTVL++G +  RE  +HFG APG   S+T PYV+  G+K E+
Sbjct:   10 DRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKGRKFEK 177          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.014e-38
Identity = 87/161 (54.04%), Postives = 108/161 (67.08%), Query Frame = 2
Query:   29 NRNIKPTRTTNP-----YHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG---QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYV 484
            +RN +     NP     Y  L+++LYKFLARRT S FN  + +RL  SR NR P+S+SR+ + +K    + K+AV + TVTND R+  VPKLT+ AL+ T  AR RI+ AGG+  T DQLALK P GK TVLL+G  K REA RHFGPAPG  GSHT PYV
Sbjct:    7 HRNKRKVVRRNPKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYV 167          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.937e-38
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S+FN+ +LKRL  SRTNR P+S+SR+++ +K    ++K AV V  +T D R+  +PKLT+ ALK T  AR RI+ AGGQ  TFDQLAL  P G+NTVLL G  K RE  RHFG AP    S T PYV   G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.496e-37
Identity = 83/158 (52.53%), Postives = 113/158 (71.52%), Query Frame = 2
Query:   50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG---QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            ++ N Y  LL+++Y+FLARR+ + FN+ +LKRL  SR N+  IS++RV + +K    ++ +AV V TVT+D RL  VPKL + AL+ TE+AR RI+ AGG+  TFDQLA++ P GK TVL++G +  REA RHFGPAPG   SHT PYVR  G+K ER
Sbjct:   19 KSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4)

HSP 1 Score: 155.606 bits (392), Expect = 1.954e-37
Identity = 86/168 (51.19%), Postives = 113/168 (67.26%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S+FN+ +LKRL  SRTNR P+S+SR+++ +K Q   +K AV V  +T+D R+  +PKL + ALK T   R RI+ +GGQ  TFDQLAL  P G+NTVLL G  K RE  RHFG APG   S T PYV   G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37
Identity = 84/166 (50.60%), Postives = 117/166 (70.48%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K R  +P R+ + Y  LL+++Y+FLARRT S F++ ILKRL  SR N  PIS++RV + +K + +   +AV V T+T+DAR+  +PKL + AL+ TEKAR RI+ AGG+  TF++LA  +PTG  TVL++G +  REA++HFGPAPG   SHT P VR  G+K ER
Sbjct:   12 KVRRTEP-RSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFER 176          
The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_CAEEL1.598e-3954.4360S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_DIACI2.087e-3951.8360S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_CAEBR2.726e-3955.0660S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_BOVIN7.932e-3951.1960S ribosomal protein L18 OS=Bos taurus GN=RPL18 P... [more]
RL18_ANOGA2.308e-3849.4060S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18_TAEAS3.014e-3854.0460S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18A_XENLA3.937e-3851.7960S ribosomal protein L18-A OS=Xenopus laevis GN=r... [more]
RL18_IXOSC1.496e-3752.5360S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18B_XENLA1.954e-3751.1960S ribosomal protein L18-B OS=Xenopus laevis GN=r... [more]
RL18_LYSTE3.333e-3750.6060S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AF07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bp
CGATCTTAAAGCCGGTGGCAGAACCAAGAACAGAAACATCAAGCCCACAA
GGACCACCAATCCTTACCACACCTTATTGATCAGACTCTACAAATTCTTG
GCCAGAAGAACCGAGTCTGCCTTCAATAAGACCATCCTTAAACGTCTCCA
CCAGTCTAGAACCAACCGTTACCCCATCAGCGTGTCCCGTGTCGTTAAGA
ACCTCAAGGGACAAGACAAAGTCGCTGTTTGCGTCACCACAGTCACAAAC
GACGCTAGACTTTTGGTCGTTCCCAAGCTCACTATCGTCGCTTTAAAGTT
CACTGAGAAAGCCAGAGAAAGAATCGTGGCTGCTGGTGGACAAGCTTGGA
CTTTCGATCAGCTCGCTCTTAAGAACCCCACTGGTAAAAACACTGTACTC
TTGAGAGGAGCTAAGAGAAGAGAAGCTCTTAGACACTTCGGTCCCGCTCC
AGGTGCTAAAGGCTCTCACACTGCTCCATATGTCAGAGGACACGGCAAGA
AGCAAGAGAGAATATAATAGTTGTATTAGATACGGATGCATATTTAGTCG
AGATGTTTACATATCCATAACACTGTTGACGGACCGAACGGATTTAGTGG
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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