FC871204

Overview
NameFC871204
Unique NameFC871204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37
Identity = 85/166 (51.20%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K R  +P ++ + Y  LL++LY++LARRT + FNK ILKRL  S+  R PIS+S+VV+ +K   +    AV V TVT+D+R+  +PKL+I AL+ T+ AR  I+ AGG+  TFDQLAL++PTG  TVLL+G +  REA++HFGPAPG   SH  P VR  G+K ER
Sbjct:   12 KVRRTEP-KSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFER 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 86/177 (48.59%), Postives = 117/177 (66.10%), Query Frame = 2
Query:   14 GGRTKNRNIKP-TRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD---------KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            G + K R ++  T +TNPY  LLI+LYKFLA+RT SAFNK + +RL +SR+NR PIS+SR+   +K +           +AV V  V +D R+  +P L + AL+F++ ARERI  AGG+  TFDQLA+  PTGKNT LLRG K  RE+++HFG A G  GSH  P+    GK+++R
Sbjct:    7 GVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGKERQR 182          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36
Identity = 87/177 (49.15%), Postives = 116/177 (65.54%), Query Frame = 2
Query:   14 GGRTKNRNIKP-TRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---------DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            G + K R ++  T +TNPY  LLI+LYKFL +RT S FNK I KRL +SR NR PIS+SR+   ++ +           +AV V  V +D R+  +P L I AL+F++ ARERI  AGG+  TFDQLA+  PTGKNT+LLRG K  RE+++HFG A G  GSH  P+V   GK+++R
Sbjct:    7 GVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQR 182          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36
Identity = 83/165 (50.30%), Postives = 111/165 (67.27%), Query Frame = 2
Query:   47 TRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD---------KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            T +TNPY  LLI+LYKFLA+RT S FNK + +RL +SR+NR PIS+SR+   +K +           +AV V  V +D R+  +P + + AL+F++ AR+ IVAAGG+  TFDQLA+  PTGKNT LLRG K  RE++RHFG A G  GSH+ PY    GK+ +R
Sbjct:   19 TYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGKETKR 182          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36
Identity = 86/172 (50.00%), Postives = 115/172 (66.86%), Query Frame = 2
Query:    2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNL-KGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGA-KRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            DL   GR K    K   + NPY  LL++LYKFL+RRT+ +FNK +LKRL   R  + P+S+S++ K++ K  D  AV V TVTND R+ VVPKL++ AL+ TE AR+RI+A+GG+  TFDQL  ++PTG    LLRGA K REA++HF      KG +  PYVR  G+K E+
Sbjct:    4 DLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHF--RNEVKG-NPKPYVRSKGRKFEK 172          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = 2
Query:   50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            ++ N Y  LL++LY FLARRT++ FNK +LK L  S+ NR P+SVSR+ + LK +   +K  V V TVT+DAR+   PK T+ AL+FT  AR +IV AGG+  T DQLA++ P G+NT++LRG +  REA+RHFG  P  KG   AP +   G+K ER
Sbjct:   20 KSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMGP-HKGK--APRILSTGRKFER 174          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 80/172 (46.51%), Postives = 113/172 (65.70%), Query Frame = 2
Query:    2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ-DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            DL   GR K    K   + NPY  LL++L+KFLARRT+  FNK +LKRL   R  + P+S+S++ K+++ + +  AV + TVT+D R+ VVPKL++ AL+ TE AR+RI+A+GG+  TFDQL  ++P G    LLRG  K REA++HF      KG +  PYVR  G+K E+
Sbjct:    4 DLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHF--RNEVKG-NPKPYVRSKGRKFEK 172          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.399e-19
Identity = 61/158 (38.61%), Postives = 93/158 (58.86%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESA-FNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYV 484
            K+R ++P +  +   TLL+++Y+    +  +A FNK +L+RL  SRT+R P+SVSR+++ +K    +++ AV V TVT+D R+  +P L + ALK T + R RI+    Q   F  LAL  P  + +VLL   +  R+  RHF  AP     HT PYV
Sbjct:    9 KDRLVRPKQPLSEDITLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSI--PHTKPYV 163          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALK 298
            K+R +  K  ++ + Y  LL++L +FLARRT S FN+ +LKRL  SRTNR P+S+SR+ + +K    + K AV V T+T+D R   VPKL + AL+
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_TIMBA5.685e-3751.2060S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_TRYCR2.821e-3648.5960S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_TRYBB2.821e-3649.1560S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_LEIMA4.812e-3650.3060S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_THEPA8.209e-3650.0060S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_YEAST8.494e-3350.0060S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18_THEAN1.109e-3246.5160S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_SALSA2.399e-1938.6160S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]
RL18_PIG1.043e-1445.8360S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AF07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bp
CGATCTTAAAGCCGGTGGCAGAACCAAGAACAGAAACATCAAGCCCACAA
GGACCACCAATCCTTACCACACCTTATTGATCAGACTCTACAAATTCTTG
GCCAGAAGAACCGAGTCTGCCTTCAATAAGACCATCCTTAAACGTCTCCA
CCAGTCTAGAACCAACCGTTACCCCATCAGCGTGTCCCGTGTCGTTAAGA
ACCTCAAGGGACAAGACAAAGTCGCTGTTTGCGTCACCACAGTCACAAAC
GACGCTAGACTTTTGGTCGTTCCCAAGCTCACTATCGTCGCTTTAAAGTT
CACTGAGAAAGCCAGAGAAAGAATCGTGGCTGCTGGTGGACAAGCTTGGA
CTTTCGATCAGCTCGCTCTTAAGAACCCCACTGGTAAAAACACTGTACTC
TTGAGAGGAGCTAAGAGAAGAGAAGCTCTTAGACACTTCGGTCCCGCTCC
AGGTGCTAAAGGCTCTCACACTGCTCCATATGTCAGAGGACACGGCAAGA
AGCAAGAGAGAATATAATAGTTGTATTAGATACGGATGCATATTTAGTCG
AGATGTTTACATATCCATAACACTGTTGACGGACCGAACGGATTTAGTGG
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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