FC871204
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 5.685e-37 Identity = 85/166 (51.20%), Postives = 116/166 (69.88%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 K R +P ++ + Y LL++LY++LARRT + FNK ILKRL S+ R PIS+S+VV+ +K + AV V TVT+D+R+ +PKL+I AL+ T+ AR I+ AGG+ TFDQLAL++PTG TVLL+G + REA++HFGPAPG SH P VR G+K ER Sbjct: 12 KVRRTEP-KSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFER 176
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36 Identity = 86/177 (48.59%), Postives = 117/177 (66.10%), Query Frame = 2 Query: 14 GGRTKNRNIKP-TRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD---------KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 G + K R ++ T +TNPY LLI+LYKFLA+RT SAFNK + +RL +SR+NR PIS+SR+ +K + +AV V V +D R+ +P L + AL+F++ ARERI AGG+ TFDQLA+ PTGKNT LLRG K RE+++HFG A G GSH P+ GK+++R Sbjct: 7 GVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRGKERQR 182
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.821e-36 Identity = 87/177 (49.15%), Postives = 116/177 (65.54%), Query Frame = 2 Query: 14 GGRTKNRNIKP-TRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---------DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 G + K R ++ T +TNPY LLI+LYKFL +RT S FNK I KRL +SR NR PIS+SR+ ++ + +AV V V +D R+ +P L I AL+F++ ARERI AGG+ TFDQLA+ PTGKNT+LLRG K RE+++HFG A G GSH P+V GK+++R Sbjct: 7 GVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQR 182
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 4.812e-36 Identity = 83/165 (50.30%), Postives = 111/165 (67.27%), Query Frame = 2 Query: 47 TRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD---------KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 T +TNPY LLI+LYKFLA+RT S FNK + +RL +SR+NR PIS+SR+ +K + +AV V V +D R+ +P + + AL+F++ AR+ IVAAGG+ TFDQLA+ PTGKNT LLRG K RE++RHFG A G GSH+ PY GK+ +R Sbjct: 19 TYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRGKETKR 182
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36 Identity = 86/172 (50.00%), Postives = 115/172 (66.86%), Query Frame = 2 Query: 2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNL-KGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGA-KRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 DL GR K K + NPY LL++LYKFL+RRT+ +FNK +LKRL R + P+S+S++ K++ K D AV V TVTND R+ VVPKL++ AL+ TE AR+RI+A+GG+ TFDQL ++PTG LLRGA K REA++HF KG + PYVR G+K E+ Sbjct: 4 DLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHF--RNEVKG-NPKPYVRSKGRKFEK 172
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33 Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = 2 Query: 50 RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ---DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 ++ N Y LL++LY FLARRT++ FNK +LK L S+ NR P+SVSR+ + LK + +K V V TVT+DAR+ PK T+ AL+FT AR +IV AGG+ T DQLA++ P G+NT++LRG + REA+RHFG P KG AP + G+K ER Sbjct: 20 KSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMGP-HKGK--APRILSTGRKFER 174
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32 Identity = 80/172 (46.51%), Postives = 113/172 (65.70%), Query Frame = 2 Query: 2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQ-DKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511 DL GR K K + NPY LL++L+KFLARRT+ FNK +LKRL R + P+S+S++ K+++ + + AV + TVT+D R+ VVPKL++ AL+ TE AR+RI+A+GG+ TFDQL ++P G LLRG K REA++HF KG + PYVR G+K E+ Sbjct: 4 DLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHF--RNEVKG-NPKPYVRSKGRKFEK 172
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.399e-19 Identity = 61/158 (38.61%), Postives = 93/158 (58.86%), Query Frame = 2 Query: 26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESA-FNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYV 484 K+R ++P + + TLL+++Y+ + +A FNK +L+RL SRT+R P+SVSR+++ +K +++ AV V TVT+D R+ +P L + ALK T + R RI+ Q F LAL P + +VLL + R+ RHF AP HT PYV Sbjct: 9 KDRLVRPKQPLSEDITLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSI--PHTKPYV 163
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.043e-14 Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 2 Query: 26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALK 298 K+R + K ++ + Y LL++L +FLARRT S FN+ +LKRL SRTNR P+S+SR+ + +K + K AV V T+T+D R VPKL + AL+ Sbjct: 9 KDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104 The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bpback to top |