FC871195

Overview
NameFC871195
Unique NameFC871195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.320e-32
Identity = 67/100 (67.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+P+G D R RR+ KG+ LMPNIGYGS+KKT+H LP+GF+KF+VHN  ELE+L+M N++YCAEIAHNVS+K RK I ERAAQL + VTN  ARLRS+E E
Sbjct:   36 RKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.724e-32
Identity = 66/100 (66.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+P+G D R RR+ KG+ LMPNIGYGS+KKT+H LP+GF+KF+VHN  ELE+L+M N++YCAEIAHNVS+K RK I ERAAQL + +TN  ARLRS+E E
Sbjct:   36 RKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_ICTPU (60S ribosomal protein L32 OS=Ictalurus punctatus GN=rpl32 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.840e-32
Identity = 67/100 (67.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+P+G D R R   KG+ LMPNIGYGS+KKT+H LP+GFKKF+VHN  ELE+L+M N++YCAEIAHNVS+K RK I ERAAQL + VTN  ARLRS+E E
Sbjct:   36 RKPRGIDNRVRSGFKGQMLMPNIGYGSNKKTKHMLPSGFKKFLVHNVKELEVLLMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_APIME (60S ribosomal protein L32 OS=Apis mellifera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.246e-31
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+PKG D R RR+ KG+ LMPNIGYGS+KKTRH LP GF+K +VHN  ELE+LMM NR +CAEIAH  S+KKRK I ERA QL + VT   ARLRSQE E
Sbjct:   35 RKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQENE 134          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32P_MOUSE (Putative 60S ribosomal protein L32' OS=Mus musculus GN=Rpl32-ps PE=5 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.848e-27
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+P+G D R RR+ KG+ LMPNIGY S+KKT+H L +GF+KF+VHN  E E+L+M N++Y AEIAHNVS+K RK I ERAAQL + VTN   RL S+E E
Sbjct:   36 RKPRGIDNRVRRRFKGQILMPNIGYRSNKKTKHTLSSGFRKFLVHNIKEPEVLLMCNKSYRAEIAHNVSSKNRKAIVERAAQLAIRVTNPNTRLHSEENE 135          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_NEUCR (60S ribosomal protein L32 OS=Neurospora crassa GN=rpl-32 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.015e-26
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQ 299
            R+PKG D R RR+ +G   MP+IGYGS+KKTRH +P+G K F+V N  ++ELL+MHN+TY AEIAHNVS++KR EI  RA QL V VTN  A++ ++
Sbjct:   34 RKPKGIDNRVRRRFRGTLAMPSIGYGSNKKTRHMMPSGHKAFLVSNVKDVELLLMHNKTYAAEIAHNVSSRKRIEIIARAKQLSVKVTNAKAKVTTE 130          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32B_SCHPO (60S ribosomal protein L32-B OS=Schizosaccharomyces pombe GN=rpl32b PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.728e-24
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQE 302
            R+P+G D   RR+ +G   MP IGYG++KKTR+ +PNG K F+V N +++ELL+MHN+TY AEIA NVS +KR EI E+A  L V VTN  A++RSQE
Sbjct:   30 RKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32A_SCHPO (60S ribosomal protein L32-A OS=Schizosaccharomyces pombe GN=rpl32a PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.256e-24
Identity = 55/98 (56.12%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQE 302
            R+P+G D   RR+ +G   MP IGYG++KKTR+ +PNG K F+V N +++ELL+MHN+TY AEIA NVS +KR EI E+A  L V VTN  A++RSQE
Sbjct:   30 RKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_DICDI (60S ribosomal protein L32 OS=Dictyostelium discoideum GN=rpl32 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.910e-23
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            R+P+G D R RR+  G   MP+IG+GS K T+   P+GFK+FV+ N  ELE+L+M NR Y A I H VS K RK I ERAA+L++ VT   ARLRS+E E
Sbjct:   34 RKPRGIDNRVRRRFSGSRAMPSIGFGSAKATKDVCPDGFKRFVIRNVQELEVLLMQNRRYAAVIFHGVSAKSRKAIVERAAELNIKVTTPNARLRSEERE 133          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_ASHGO (60S ribosomal protein L32 OS=Ashbya gossypii GN=RPL32 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-18
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARL 290
            R+ KG D   RR+ +G+   P IGYGS+KKTR   P+G K ++V N  +LE+LMMH +TY AEIA NVS+K R  I  RA  L + VTN   RL
Sbjct:   34 RKQKGIDSVVRRRFRGQISEPTIGYGSNKKTRFMTPSGHKTYLVSNIKDLEVLMMHTKTYAAEIASNVSSKNRVSILARAKALGIKVTNPKGRL 127          
The following BLAST results are available for this feature:
BLAST of FC871195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL32_HUMAN1.320e-3267.0060S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_BOVIN1.724e-3266.0060S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_ICTPU3.840e-3267.0060S ribosomal protein L32 OS=Ictalurus punctatus G... [more]
RL32_APIME4.246e-3167.0060S ribosomal protein L32 OS=Apis mellifera GN=RpL... [more]
RL32P_MOUSE2.848e-2761.00Putative 60S ribosomal protein L32' OS=Mus musculu... [more]
RL32_NEUCR7.015e-2657.7360S ribosomal protein L32 OS=Neurospora crassa GN=... [more]
RL32B_SCHPO1.728e-2456.1260S ribosomal protein L32-B OS=Schizosaccharomyces... [more]
RL32A_SCHPO2.256e-2456.1260S ribosomal protein L32-A OS=Schizosaccharomyces... [more]
RL32_DICDI1.910e-2354.0060S ribosomal protein L32 OS=Dictyostelium discoid... [more]
RL32_ASHGO2.416e-1851.0660S ribosomal protein L32 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871195 ID=FC871195; Name=FC871195; organism=Citrus sinensis; type=EST; length=484bp
AAAAAGGGCGAAGGCCGAAGGGAAACGACCCACGAGCCAGGAGAAAGCCC
AAAGGACGTCCTCTGATGCCCAATATTGGCTACGGCTCGGACAAGAAAAC
ACGCCACTATCTGCCCAATGGATTCAAGAAGTTTGTTGTGCACAATGCCA
ATGAACTGGAACTCTTGATGATGCACAACAGGACTTATTGCGCTGAGATA
GCCCACAACGTATCAACCAAGAAGAGAAAGGAGATTGACGAGCGCGCTGC
ACAATTGGATGTTGTGGTCACCAACAAATTGGCCAGGTTGCGCAGCCAGG
AGGAGGAGTAAAAATTGGTTTCTATATTTTATGTTAGTGTTTGCTTTTGG
CCAAATGTTTCCTAGGTTGTCTTTGGAATGGATGAACATTTCCAGGGTTG
AATTATGATGTATTTTCTATTTTTGTCACCTGAATGATATTTTGAATTTG
TTGTTTTTTGCGGAGCATGATTAATGTTATGTCA
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