FC871195

Overview
NameFC871195
Unique NameFC871195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.383e-18
Identity = 47/94 (50.00%), Postives = 58/94 (61.70%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARL 290
            R+ KG D   RR+ +G    P IGYGS+KKT+   P+G K F+V N  +LE L MH +TY AEIAHN+S K R  I  RA  L + VTN   RL
Sbjct:   33 RKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.952e-17
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARL 290
            R+ KG D   RR+ +G    PNIGYGS+KKT+   P G+K ++V N  +L++L++H ++Y AEIA +VS++KR EI  +A +L V VTN   +L
Sbjct:   34 RKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARL 290
            R+ KG D   RR+ +G    P IGYGS+KKT+   P+G K  +V N  +LE L MH ++Y AEIAHNVS+K R  +  RA  L V VTN   RL
Sbjct:   34 RKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.039e-16
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:    9 RRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            RRP G D + R++ KG   MP+I Y   K+ RH LPNG +K  + N N+L  L   NR YC EIAH V  +KR  I  RA +L + + N  ARL  + EE
Sbjct:   40 RRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.716e-14
Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K RRPKG   + RRK K +P MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI E+A +L +VV N
Sbjct:   42 KWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.372e-13
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K RRPKG D + R K KG+P  P+IG+ S K  R   P+G+++ +VHN  ELE L    +   A IAH V  KKR EI +RA +L + V N
Sbjct:   39 KWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.057e-13
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K RRPKG D + R K KG+P  P+IG+ S +  R   P+G+++ ++HN  ELE L    R   A IAH V  KKR EI +RA +L + V N
Sbjct:   39 KWRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.810e-13
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K RRPKG D + R K KG+P  P+IG+ S +  R   P+G+++ ++HN  ELE L    +   A IAH V  KKR EI +RA +L + V N
Sbjct:   39 KWRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.765e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  183 TYCAEIAHNVSTKKRKEIDERAAQLDVVVTNKLARLRSQEEE 308
            TYCAEIAHNVSTKKRKEI ERAAQLD+VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_THEGJ (50S ribosomal protein L32e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K RRPKG D + R K KG+P  P+IG+ S +  R   P+G+++ +VHN  ELE +        A IA  V  +KR+ I  RA +L + V N
Sbjct:   37 KWRRPKGIDSKMRLKKKGKPRSPSIGWSSPRAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIARTVGARKREAIIARAKELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of FC871195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL32_YEAST5.383e-1850.0060S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL5.952e-1745.7460S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA1.326e-1648.9460S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU5.039e-1645.0060S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_METKA4.716e-1445.0550S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRFU1.372e-1346.1550S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO3.057e-1345.0550S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_PYRAB6.810e-1343.9650S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_MAIZE5.765e-1283.3360S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_THEGJ2.191e-1140.6650S ribosomal protein L32e OS=Thermococcus gammato... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871195 ID=FC871195; Name=FC871195; organism=Citrus sinensis; type=EST; length=484bp
AAAAAGGGCGAAGGCCGAAGGGAAACGACCCACGAGCCAGGAGAAAGCCC
AAAGGACGTCCTCTGATGCCCAATATTGGCTACGGCTCGGACAAGAAAAC
ACGCCACTATCTGCCCAATGGATTCAAGAAGTTTGTTGTGCACAATGCCA
ATGAACTGGAACTCTTGATGATGCACAACAGGACTTATTGCGCTGAGATA
GCCCACAACGTATCAACCAAGAAGAGAAAGGAGATTGACGAGCGCGCTGC
ACAATTGGATGTTGTGGTCACCAACAAATTGGCCAGGTTGCGCAGCCAGG
AGGAGGAGTAAAAATTGGTTTCTATATTTTATGTTAGTGTTTGCTTTTGG
CCAAATGTTTCCTAGGTTGTCTTTGGAATGGATGAACATTTCCAGGGTTG
AATTATGATGTATTTTCTATTTTTGTCACCTGAATGATATTTTGAATTTG
TTGTTTTTTGCGGAGCATGATTAATGTTATGTCA
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