FC871195

Overview
NameFC871195
Unique NameFC871195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K RRPKG D + R K KG+P  P+IG+ S K  R   P+G+++ +VHN  ELE +        A IA  V  +KR+ I  RA +L V V N
Sbjct:   37 KWRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125          
BLAST of FC871195 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    3 KGRRPKGNDPRARRKPKGRPLMPNIGYGSDKKTRHYLPNGFKKFVVHNANELELLMMHNRTYCAEIAHNVSTKKRKEIDERAAQLDVVVTN 275
            K R+PKG D + R K KG+   P+IG+ S K  R   P+G+++ +V+N  +LEL+   ++   A IA  V  KKR  I ERA +L + V N
Sbjct:   37 KWRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of FC871195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL32_PYRKO2.191e-1142.8650S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]
RL32_THESM8.325e-1140.6650S ribosomal protein L32e OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871195 ID=FC871195; Name=FC871195; organism=Citrus sinensis; type=EST; length=484bp
AAAAAGGGCGAAGGCCGAAGGGAAACGACCCACGAGCCAGGAGAAAGCCC
AAAGGACGTCCTCTGATGCCCAATATTGGCTACGGCTCGGACAAGAAAAC
ACGCCACTATCTGCCCAATGGATTCAAGAAGTTTGTTGTGCACAATGCCA
ATGAACTGGAACTCTTGATGATGCACAACAGGACTTATTGCGCTGAGATA
GCCCACAACGTATCAACCAAGAAGAGAAAGGAGATTGACGAGCGCGCTGC
ACAATTGGATGTTGTGGTCACCAACAAATTGGCCAGGTTGCGCAGCCAGG
AGGAGGAGTAAAAATTGGTTTCTATATTTTATGTTAGTGTTTGCTTTTGG
CCAAATGTTTCCTAGGTTGTCTTTGGAATGGATGAACATTTCCAGGGTTG
AATTATGATGTATTTTCTATTTTTGTCACCTGAATGATATTTTGAATTTG
TTGTTTTTTGCGGAGCATGATTAATGTTATGTCA
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