FC871167

Overview
NameFC871167
Unique NameFC871167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 3
Query:  420 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF---PDETPAAAPKSSGKANSQKSVPKA 692
            K S   + + +YRG+RQRPWGKWAAEIRDP +  R+WLGTF T              +RG  A  NF   P+  P    +   ++N   S+ ++
Sbjct:  106 KPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISES 199          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  375 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 647
            RK  GS+ V            K   +YRG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP +   ++P
Sbjct:    2 RKGRGSSVVGPALPVTAGGSVKEP-RYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPSSP 91          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  432 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 623
            E+ ++ +YRG+R+RPWG++AAEIRDP K  RVWLG+FNT               RG KA  NFP
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 3
Query:  429 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSGKANS 671
            T  +++  +RG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP    +      G+ +S
Sbjct:   25 TTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDGGENDS 105          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.429e-12
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  444 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 629
            +  YRG+R+RPWGK+AAEIRDP  KGVRVWLGTF+T              +RG KA +NFP E
Sbjct:   69 QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 3
Query:  450 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP---DETPAAAPKSSGKANSQKS 680
            +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP   + +    P    ++ SQ S
Sbjct:   24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPSQSS 103          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 3
Query:  408 VEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 623
            V+ A   T      +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:    5 VKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  453 YRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF--------PDETPAAAPKSSGKANSQKSVPK 689
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +NF        PD     + +SS  ++++   PK
Sbjct:  148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPK 235          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 41/109 (37.61%), Postives = 52/109 (47.71%), Query Frame = 3
Query:  366 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSGKANSQKSVPKA 692
            S  RK         +  A  ST R     YRG+R+RPWG++AAEIRDP    R WLGTF+T               RG KA+ NF   T    P+     +++KS P A
Sbjct:   33 SRNRKLSSKDTTVTIAGAGSSTTR-----YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEPRFSFSNKKSSPSA 136          
BLAST of FC871167 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = 3
Query:  441 RKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF--------PDETPAAAPKSSGKANSQKS 680
            +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +NF        PD     + +SS  ++S  S
Sbjct:  113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSS 201          
The following BLAST results are available for this feature:
BLAST of FC871167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CRF4_ARATH1.539e-1238.30Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF83_ARATH2.626e-1241.76Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF77_ARATH2.626e-1250.00Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF80_ARATH3.429e-1241.98Ethylene-responsive transcription factor 9 OS=Arab... [more]
EF105_ARATH3.429e-1255.56Ethylene-responsive transcription factor ERF105 OS... [more]
ERF78_ARATH4.479e-1245.00Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF76_ARATH4.479e-1248.61Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF100_ARATH4.479e-1243.18Ethylene-responsive transcription factor 1A OS=Ara... [more]
ESR1_ARATH7.639e-1237.61Ethylene-responsive transcription factor ESR1 OS=A... [more]
EF101_ARATH7.639e-1242.70Ethylene-responsive transcription factor 2 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2AD11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871167 ID=FC871167; Name=FC871167; organism=Citrus sinensis; type=EST; length=701bp
CCGACACTCTCTCTTTTGGAGAAGAGCAAAGTTTACATTGAACCCAGTCT
CTTCTAAAAAGCTTTTCTCTTTAGTCCCTGAACTAAAACCAGAAGAAACG
AGAAACCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTACATCCCGC
CCACCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAGTATCTCTGGCCG
GAGCTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGA
TGACTTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTG
ACATTGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGCTGATATT
AAGCCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGT
GAAGCACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATC
AATATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATC
CGTGATCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGC
TGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGA
AGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAG
AGCTCAGGGAAGGCAAACTCTCAGAAATCAGTTCCCAAAGCTTGCCTAAG
C
back to top