FC871150

Overview
NameFC871150
Unique NameFC871150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_MERUN (Macrophage migration inhibitory factor OS=Meriones unguiculatus GN=MIF PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 39/109 (35.78%), Postives = 56/109 (51.38%), Query Frame = 3
Query:    3 STNV*LDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            +TNV    V    +LSE T  +A   GKP  Y+ + +     M+F G+ DP A   L SIG +    N+  S  +  +L  +L +   R +I +YD   +N GWNGSTF
Sbjct:    7 NTNVPRSSVP-EGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGSSDPCALCSLHSIGKIGGAQNRTYSKLLCGLLADRLRISPDRIYINYYDMNAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_SHEEP (Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3
Query:   42 ILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:   19 LLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_BOVIN (Macrophage migration inhibitory factor OS=Bos taurus GN=MIF PE=1 SV=6)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3
Query:   42 ILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:   19 LLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_MACMU (Macrophage migration inhibitory factor OS=Macaca mulatta GN=MIF PE=3 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 3
Query:   45 LSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:   20 LSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_MACFA (Macrophage migration inhibitory factor OS=Macaca fascicularis GN=MIF PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 3
Query:   45 LSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:   20 LSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
BLAST of FC871150 vs. ExPASy Swiss-Prot
Match: MIF_HUMAN (Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 3
Query:   45 LSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 329
            LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:   20 LSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114          
The following BLAST results are available for this feature:
BLAST of FC871150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIF_MERUN2.472e-1235.78Macrophage migration inhibitory factor OS=Meriones... [more]
MIF_SHEEP4.217e-1236.46Macrophage migration inhibitory factor OS=Ovis ari... [more]
MIF_BOVIN4.217e-1236.46Macrophage migration inhibitory factor OS=Bos taur... [more]
MIF_MACMU9.395e-1235.79Macrophage migration inhibitory factor OS=Macaca m... [more]
MIF_MACFA9.395e-1235.79Macrophage migration inhibitory factor OS=Macaca f... [more]
MIF_HUMAN9.395e-1235.79Macrophage migration inhibitory factor OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DA03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871150 ID=FC871150; Name=FC871150; organism=Citrus sinensis; type=EST; length=682bp
TTTCAACTAACGTCTAACTCGATGGCGTTGACACGTCATCCATCCTCTCC
GAGGCCACCTCCACTGTCGCCAACATCATCGGCAAACCCGAGGCCTACGT
GATGATTGTGTTGAAGGGATCAGTACCTATGTCTTTTGGTGGAACTGAGG
ACCCGGCAGCTTATGGTGAGTTGGTGTCCATTGGTGGCCTTAACCCTGAT
GTGAACAAGAAGCTGAGTGCTGCAATTTCTGCAATTCTTGAAAAGAAGCT
GTCGGTACCCAAGTCACGATTCTTCATCAAGTTTTATGACACAAAGGGTT
CAAACTTTGGATGGAATGGATCCACCTTCTAGATATTATTCTCAAAGCAT
GGCGCCATGAACTCTGACAATTGTCTTATCTATATGGTGATTACAATCTT
TAGAACAATGTTAATAATTGGCTGAATATTGTGTAATTTCTCCTATGATG
TGTTTTCTTCTCGTTGGTGCTAGCCAACAATATTGTGGAATAGGAACTGT
TTGGTTTATGGAGTAATATTACATTTGTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCC
CCCTTTCTTTTTAAAAGTTTGGTAAAAAAAAA
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