FC871145

Overview
NameFC871145
Unique NameFC871145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.695e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  210 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.695e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  201 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.519e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  206 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   48 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  199 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  199 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  198 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  197 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  197 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  197 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of FC871145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2A_PINSY2.695e-3397.10Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_PEA2.695e-3397.10Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2B_PINSY3.519e-3397.10Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2D_SOLLC4.597e-3397.10Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB27_TOBAC4.597e-3397.10Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP4.597e-3397.10Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC4.597e-3397.10Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC6.003e-3397.10Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC6.003e-3397.10Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC6.003e-3397.10Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871145 ID=FC871145; Name=FC871145; organism=Citrus sinensis; type=EST; length=607bp
TTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGA
AATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTC
AGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTG
GCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCC
CGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGG
ATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTG
ATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
CCATTTTTTTGGAACAATTTGGGATTTAAAAAAAACCTTGGTTTACAATT
TTGTGGCACCAAAAGGGTCCTTTCCGTTAAAAAAAAATCTTTTTTTGGCC
CCCCGGCAAATCCCCCCAAAGGGGGGCCAAATAACGGGGCTTAACTGTTT
CCCGGGCCCCCCGGGCCCCGGTTCTCAAATTTTTGGAGTTAAATTGCAAA
AAAAAAA
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