FC871145

Overview
NameFC871145
Unique NameFC871145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.619e-31
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  199 LGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  195 LGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  195 LGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1
Query:   16 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   61 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.114e-30
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  198 LGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 59/69 (85.51%), Postives = 67/69 (97.10%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 207
            LGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  197 LGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 204
            LGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  197 LGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.594e-28
Identity = 60/68 (88.24%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 204
            LGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  200 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.295e-27
Identity = 59/68 (86.76%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 204
            LGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 201
            LGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  188 LGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of FC871145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB22_PETSP5.619e-3191.30Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_ORYSJ1.252e-3089.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.252e-3089.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.252e-3098.44Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_WHEAT8.114e-3089.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA1.808e-2985.51Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC3.409e-2888.24Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA7.594e-2888.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU1.295e-2786.76Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO1.212e-2583.58Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871145 ID=FC871145; Name=FC871145; organism=Citrus sinensis; type=EST; length=607bp
TTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGA
AATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTC
AGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTG
GCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCC
CGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGG
ATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTG
ATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
CCATTTTTTTGGAACAATTTGGGATTTAAAAAAAACCTTGGTTTACAATT
TTGTGGCACCAAAAGGGTCCTTTCCGTTAAAAAAAAATCTTTTTTTGGCC
CCCCGGCAAATCCCCCCAAAGGGGGGCCAAATAACGGGGCTTAACTGTTT
CCCGGGCCCCCCGGGCCCCGGTTCTCAAATTTTTGGAGTTAAATTGCAAA
AAAAAAA
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