FC871145

Overview
NameFC871145
Unique NameFC871145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC871145 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 LGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 165
            LGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  226 LGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
The following BLAST results are available for this feature:
BLAST of FC871145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB4A_ARATH3.787e-1160.00Chlorophyll a-b binding protein CP29.1, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AC06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871145 ID=FC871145; Name=FC871145; organism=Citrus sinensis; type=EST; length=607bp
TTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGA
AATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTC
AGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTG
GCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCC
CGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGG
ATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTG
ATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC
CCATTTTTTTGGAACAATTTGGGATTTAAAAAAAACCTTGGTTTACAATT
TTGTGGCACCAAAAGGGTCCTTTCCGTTAAAAAAAAATCTTTTTTTGGCC
CCCCGGCAAATCCCCCCAAAGGGGGGCCAAATAACGGGGCTTAACTGTTT
CCCGGGCCCCCCGGGCCCCGGTTCTCAAATTTTTGGAGTTAAATTGCAAA
AAAAAAA
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