FC871134

Overview
NameFC871134
Unique NameFC871134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:30..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871134 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.357e-33
Identity = 86/224 (38.39%), Postives = 111/224 (49.55%), Query Frame = 3
Query:  120 IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQ-YPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT-------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLF 680
            + N+   SC GK FYT DA+  A + YP FG +G  +  KRE+AAFFA  + ET               +C + E+N ++ YCD + K  YPCV    YYGRGP+QL  N NYG  G  +G + L  PE VA DPV+SF+ A+WFWM        + H V+                 GFG     I    EC      + Q RI YY  YC+   V PG NL+
Sbjct:   76 LPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLY 297          
BLAST of FC871134 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32
Identity = 88/223 (39.46%), Postives = 120/223 (53.81%), Query Frame = 3
Query:   84 VANIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET-GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHP-------VVNQ--------------GFGATIQRINGAVECG-GKQPAQVQARIGYYKDYCNKFGVAPGPNL 677
            V +I+T   F+  + ++    C G +FYT DAF+ AA  +P+FG+ G+ E  +RE+AAFF   +HET G +    +   +  YC   N+  P  P   YYGRGPIQLT   NY  AG A+G D +  P+ V+ DPVV+F+TA+WFWMT   P       + NQ              G+G     ING  ECG G      + R+GYYK YC+ F V  G N+
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYC-RVNEITPSDPP--YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNI 245          
BLAST of FC871134 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.128e-30
Identity = 79/193 (40.93%), Postives = 102/193 (52.85%), Query Frame = 3
Query:  153 KSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAP 665
            + FYT DAF+ AAK++P F + GS +V KRE+AAF A  +HET           +  +    +  Y       Y+GRGPIQ++ N NYGAAGKAIG D LR P+ V  D  V FKTA+WFWMT      + H V+                 G+G     I+G VECG  Q + V  RIGYYKD  + +   P
Sbjct:   17 RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHET-----------TGGWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKDNLDCYNQKP 198          
BLAST of FC871134 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 83/232 (35.78%), Postives = 119/232 (51.29%), Query Frame = 3
Query:   66 NVMCQNVANIV-TPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------------FCYIEEINKS-NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVNQGFGATIQRINGAV-------ECGGKQPAQVQARIGYYKDYCNKFGVAPGPNL 677
            N    ++ N+V T   FD + +     C  + FY+  +FL AA+++P FG+ G     KRE+AAF AH++  T               C+I     + N +C   +  +PC  GK Y  RGPIQLT N NYG AG+AIG D ++ P+ V KDP++SFKTA+WFWM+      + H +V     A  +  N  V         G    A   + IG+YK YC+  GV+ G +L
Sbjct:  123 NSTANSIGNVVVTEPLFDQMFSHRK-DCPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVENPHAWGLCHINTTTVTENDFCTSSD--WPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLNANSAANRIPNKGVIGNIISRAFGHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of FC871134 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 61/141 (43.26%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  255 FAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNL 677
            FAHVTHETG+          N YCD    Q PC  GK YYGRGPIQ++ N NYG AG+AIG DGL  P+ VA+D +  +KTA+ F                   +NG     G   A     + YY+ YC + GV PGPNL
Sbjct:   24 FAHVTHETGN----------NAYCDPSKTQKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLSAANA---VSYYRQYCQQLGVDPGPNL 133          
BLAST of FC871134 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.663e-23
Identity = 74/222 (33.33%), Postives = 102/222 (45.95%), Query Frame = 3
Query:   84 VANIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVNQ---------------GFGATIQRINGAVECGGKQPAQV-QARIGYYKDYCNKFGVAPGPNL 677
            +++I+    FD  +K +    C    FYT +AF++AAK +P FG+ G   + KREIAAF    +HET                   N  +P   G   Y  G   +  N NYG  G  +    L+ PE V  DP ++FKTA+WFWMT      + H V+ +               G+G     ING +ECG   P    + RIG+YK YC+  G   G NL
Sbjct:   85 LSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHET-------------------NGWWPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNL 284          
The following BLAST results are available for this feature:
BLAST of FC871134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI8_POPTR1.357e-3338.39Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI11_ORYSJ2.559e-3239.46Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA3.128e-3040.93Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.716e-2835.78Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
IAMY_COILA5.714e-2443.26Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
CHIB_POPTR1.663e-2333.33Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AB06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871134 ID=FC871134; Name=FC871134; organism=Citrus sinensis; type=EST; length=749bp
CTTAAGATGATATAAATATAGTACCCATTGCTCTTGAGGGCATTCTTGCC
CTAACTTTTCCCACCAATGTAATGTGTCAAAATGTTGCTAACATTGTGAC
TCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGCCGCGAGTTGTGCCG
GCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATGCTGCCAAGGCTTAT
CCTCAATTTGGTAGCGGCTCTCCAGAAGTTTCGAAGCGTGAGATTGCTGC
ATTTTTTGCACACGTCACTCATGAAACTGGACATTTCTGCTACATAGAAG
AGATTAACAAGTCCAACAGGTACTGTGATGAACAAAACAAACAGTACCCA
TGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCGATCCAACTCACCGG
AAATGGCAACTACGGAGCTGCCGGAAAAGCCATCGGGTTTGACGGATTAA
GAGCTCCCGAAACGGTGGCCAAGGACCCCGTTGTGTCATTTAAGACTGCC
GTGTGGTTTTGGATGACCAATGTGCACCCAGTTGTGAACCAAGGTTTTGG
TGCAACAATTCAGAGAATCAATGGTGCCGTTGAATGCGGTGGCAAGCAAC
CTGCTCAGGTTCAAGCTCGCATTGGATATTATAAGGATTATTGCAACAAA
TTTGGTGTTGCTCCTGGCCCAAATCTCTTCTTGTTAAAATGTTTTCGCCG
ATACTTCACTGGTTTGTTGAAATAAGGTGGGGTAATTTTTATAATATAG
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