FC871123

Overview
NameFC871123
Unique NameFC871123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:705..1481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.623e-53
Identity = 116/251 (46.22%), Postives = 160/251 (63.75%), Query Frame = 2
Query:    2 GLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPR-LVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEVYE 739
            GL+  R +EL  LRG+G G RK  DRIYD+DVYNDLG+PDK  EL+RP LGGK+ PYPRRCRTGR    +D+ +E R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ + V  D  F  F  ID L+ EG+ L    Q+  +    LP+ +V  ++++   +L ++TP+ + +DK  W RD+EF+RQ +AG+NP +I  +  +P  S LDP IYGP  SA+T + I   + G  SV++  E
Sbjct:  234 GLRVLREKELKNLRGDGSGVRKLSDRIYDFDVYNDLGNPDKSSELSRPKLGGKEVPYPRRCRTGRQSTVSDKDAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHHLIPSLKASIVAED--FADFGEIDRLYKEGLLLKLGFQDDIFKKFPLPKVVVDTLQESTKGLLKYDTPKILSKDKNAWLRDDEFARQAIAGINPVNIERVKTFPPVSNLDPKIYGPQHSALTDDHIIGHLDG-FSVQQALE 481          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.742e-47
Identity = 112/249 (44.98%), Postives = 146/249 (58.63%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEVYE 739
            L +YR EEL  +RG+G GERK +DRIYDYDVYNDLG+PD   + ARPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      F + + P  ++K I  T G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD   YG     I  E +E  +GG ++VE+  +
Sbjct:  172 LLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGNPDSGDKYARPVLGGSALPYPRRERTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLP----TNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGG-LTVEQAIQ 415          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.274e-47
Identity = 107/247 (43.32%), Postives = 145/247 (58.70%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEVYE 739
            L +YR EEL  +RG+G GERK +DR+YDYDVYNDLG+PDK   LARPVLGG   PYPRR RTGRP+   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      +    +P + +     G+  L +  P+ M  +K  W  DEEF+R+T+AG+NP  I+ + E+P +S LD   +G   S IT E +E  +GG ++VE+  +
Sbjct:   66 LLKYREEELKNVRGDGSGERKEWDRVYDYDVYNDLGNPDKGAALARPVLGGSTLPYPRRGRTGRPKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGLKSVSQDVLPVLTDAFDGNLLSLEFDNFAEVHKLYEGGVTLPTNFLSKY--APIPIVKEIFRSDGEQFLKYPPPKVMQVNKSAWMTDEEFARETIAGVNPNVIKSLEEFPPRSKLDTQSFGDHTSIITKEHLEINLGG-LTVEQAIQ 309          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.474e-46
Identity = 111/248 (44.76%), Postives = 144/248 (58.06%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVD---PDLGFPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEE 730
            L +YR EEL +LRG+G G+RK +DRIYDYDVYNDLG+PD      RP+LGG    PYPRR RTGR R  TD  SEK  G  YVPRDE F  +K   F    + S+ H ++P  ++A          F  F  + +L+  G+ LP   L Q     + LP L +     G+N+L F  P      K  W  DEEF+R+ +AG+NP  IR + E+P KSTLDP +YG   S IT E +E  +GG ++VEE
Sbjct:  184 LLKYRKEELEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGSSIYPYPRRVRTGRERTRTDPNSEK-PGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQI----SPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEE 423          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.743e-45
Identity = 107/249 (42.97%), Postives = 140/249 (56.22%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-----FPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEV 733
            L +YR EEL  LRG+G GERK ++R+YDYDVYNDLGDPDK    ARPVLGG    PYPRR RTGR     D  SE R  + Y+PRDEAF  +K   F    + SV   ++P L++AF   DL      F  F  +  L++ G+ LP         + LP L +     G+  L F  P+ +   K  W  DEEF+R+ LAG+NP  IR + E+P +S LD  +YG   S IT E +E  + G+   E +
Sbjct:  176 LVKYREEELHNLRGDGTGERKEWERVYDYDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKI--SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKEFPPRSKLDSQVYGDHTSQITKEHLEPNLEGLTVDEAI 419          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.015e-44
Identity = 104/251 (41.43%), Postives = 140/251 (55.78%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEV 733
            L++YR  EL  LRG+G G+R+ +DRIYDYDVYNDLG+PD+  E  R  LGG  + PYPRR RTGRP   TD  SE R       + YVPRDE F  +K   F    + S++  ++P L   F      F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDP++YG   S IT E IE ++ G+   E +
Sbjct:  172 LRKYRENELVTLRGDGTGKREAWDRIYDYDVYNDLGNPDQGKENVRTTLGGSADYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTDAIPLEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLEEFPPKSKLDPELYGNQNSTITAEHIEGKLDGLTIDEAI 422          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.015e-44
Identity = 106/236 (44.92%), Postives = 137/236 (58.05%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIE 697
            L  YR EEL  LRGNG GERK YDRIYDYDVYNDLG+PDK  +LARPVLGG    PYPRR RTGR    TD  +EK+   FYVPRDE    +K          S+   + P+ E+AF      + F  F  +  L+  G+ LP        +T++P  ++K +  T G +IL F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++
Sbjct:  158 LVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLD 389          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.244e-44
Identity = 107/251 (42.63%), Postives = 142/251 (56.57%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL---GFPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEVYE 739
            L  YR EEL  LRG+G GERK ++RIYDYDVYNDLG+PD     ARPVLGG +  PYPRR RTGR     D  SE R    Y+PRDEAF  +K   F    + +V   +VP+LE+ F D +     F  F  +  L+  G+ LP   L Q     + LP L +     G+N L +  P+ +   +  W  DEEF+R+ LAG+NP  I  + E+P +S LD  IYG   S I+ E +E  + G ++VEE  +
Sbjct:  179 LVHYREEELNNLRGDGTGERKEWERIYDYDVYNDLGNPDSGENHARPVLGGSETYPYPRRGRTGRKPTRKDPNSESRSDYVYLPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTNILSQ----ISPLPVLKEIFRTDGENTLKYPPPKVIQVSRSGWMTDEEFAREMLAGVNPNVICCLQEFPPRSKLDSQIYGDHTSKISKEHLEPNLEG-LTVEEAIQ 424          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.244e-44
Identity = 101/241 (41.91%), Postives = 136/241 (56.43%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAID---ALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGM 715
            L  YR EEL  LRG+G GER+ +DRIYDYDVYNDLG PD+K  L RPVLGG    PYPRR RTGR +   +  SE R    Y+PRDEAF  VK   F    + S    +VP L +  V   L  P F+  +   +L++ G+ LP         + +P   +     G+  L F  P+ +  D   W  DEEF+R+ +AG+NP+ I+ +  +P+KS LD  +YG   S IT E +E  +GG+
Sbjct:  184 LVSYRQEELKTLRGDGTGERQEWDRIYDYDVYNDLGAPDQKATLGRPVLGGSSTLPYPRRGRTGRKKTVKEPQSESRSDTVYLPRDEAFGHVKSSDFLVYILKSASQNIVPQLRSV-VTLQLNNPEFNTFEDVRSLYDGGIKLPTDVLSKI--SPIPLFSELFRSDGEAALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKEVLSFPIKSKLDSQLYGDNTSKITKEHLEPNLGGV 421          
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.168e-43
Identity = 102/245 (41.63%), Postives = 137/245 (55.92%), Query Frame = 2
Query:    5 LKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK-QNPYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGM 715
            L++YR  EL  LRG+G G+R+ +DRIYDYD+YNDLG+PD+  E  R  LGG  + PYPRR RTGRP   TD  SE R       + YVPRDE F  +K   F    + S++  ++P L   F      F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDP+ YG   S IT E IE ++ G+
Sbjct:  173 LRKYRENELLTLRGDGTGKREAWDRIYDYDIYNDLGNPDQGKENVRTTLGGSAEYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTAAIPLEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLQEFPPKSKLDPEAYGNQNSTITAEHIEDKLDGL 417          
The following BLAST results are available for this feature:
BLAST of FC871123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX3_ARATH3.623e-5346.22Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_SOYBN1.742e-4744.98Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXB_PHAVU2.274e-4743.32Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXX_SOYBN1.474e-4644.76Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX3_SOYBN4.743e-4542.97Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOXA_SOLLC4.015e-4441.43Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOYBN4.015e-4444.92Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX3_PEA5.244e-4442.63Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_LENCU5.244e-4441.91Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX1_SOLTU1.168e-4341.63Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2AA03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871123 ID=FC871123; Name=FC871123; organism=Citrus sinensis; type=EST; length=777bp
CGGATTGAAGAGATATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATG
GACAAGGAGAGCGCAAAACCTATGATAGAATCTATGATTATGATGTCTAC
AATGATCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATA
TTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTGG
TTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGTA
TAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCTG
ATATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAAA
GAAATTGGAGGAATGATTTCTGTTGAAGAGGTATACGAATGATCATTCTG
AAATATAAATCAACAAGAAAAAGTGAC
back to top