FC871123

Overview
NameFC871123
Unique NameFC871123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12709 contig Csv1_Contig12709:705..1481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871123 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.912e-35
Identity = 99/253 (39.13%), Postives = 139/253 (54.94%), Query Frame = 2 
Query:    5 LKRYRAEELTILRGNGQ-GERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDTG-DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPDIYGPPESAITTELIEKEIGGMISVEEVYE 739
            LK YR +EL  LRG+ Q G  + +DRIY YDVYNDLG+        RP+LGG  + PYPRR RT R    +D   E R       YVPRDE F  +K   F   ++ ++   ++P++ T +VD   G F  F  I  L+  G+ LP +          P +L+K +   G D++L    P  +  +K  W  DEEF+R+ LAG+NP  I  +TE+P KS+LDP  +G   S IT E IEK + G ++V++  E
Sbjct:  174 LKPYRDDELRNLRGDDQQGPYQEHDRIYRYDVYNDLGE-------GRPILGGNSDHPYPRRGRTERKPNASDPSLESRLSLLEQIYVPRDEKFGHLKTSDFLGYSIKAITQGILPAVRT-YVDTTPGEFDSFQDIINLYEGGIKLPKVAALEELRKQFPLQLIKDLLPVGGDSLLKLPVPHIIQENKQAWRTDEEFAREVLAGVNPVMITRLTEFPPKSSLDPSKFGDHTSTITAEHIEKNLEG-LTVQQALE 417
The following BLAST results are available for this feature:
BLAST of FC871123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_HORVU9.912e-3539.13Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AA03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871123 ID=FC871123; Name=FC871123; organism=Citrus sinensis; type=EST; length=777bp
CGGATTGAAGAGATATAGAGCTGAGGAGCTTACCATTTTGCGAGGTAATG
GACAAGGAGAGCGCAAAACCTATGATAGAATCTATGATTATGATGTCTAC
AATGATCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGGCCTGTGCT
TGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGGACGCCCAC
GGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACTTTTATGTT
CCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTTTCAGCAAA
GACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGAAACCGCCT
TTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTGACGCACTC
TTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGTTTTTGGAA
CACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATA
TTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTGG
TTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGTA
TAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCTG
ATATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAAA
GAAATTGGAGGAATGATTTCTGTTGAAGAGGTATACGAATGATCATTCTG
AAATATAAATCAACAAGAAAAAGTGAC
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